View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9015_low_15 (Length: 431)
Name: NF9015_low_15
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 3314679 - 3315076
Alignment:
| Q |
13 |
cagagacggtaacactaacagtaacaccagaacctctttcaaaccaccatcgtcaaatgtcaagtccaaaccaactcaacgccgcaacaccaccaccggc |
112 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3314679 |
cagaaacggtaacactaacagtaacaccagaacttctttcaaaccaccatcgtcaaatgtcaagtccaaaccaactcaacgccgcaacaccaccaccggc |
3314778 |
T |
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| Q |
113 |
gccgccaaggaccatcatgcttctggtcagttcttccattctcagatcaattacattatcatcatacattttctctctttctatatgtagagatcaatta |
212 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3314779 |
gccgccaaggaccgtcatgcttctggtcagttcttccattctctgatcaattacattatcatcatacattttctctctttctatatgtagagatcaatta |
3314878 |
T |
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| Q |
213 |
ctttcatttttgctttaattccctaattatatggtatttttagttattagaaatgaaatgctgcggaaaactaaatcaggatccgtgaaatttggagata |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3314879 |
ctttcatttttgctttaattccctaattatatggtatttttagttattagaaatgaaatgctgcggaaaactaaatcaggatccgtgaaatttggagata |
3314978 |
T |
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| Q |
313 |
aaaaactattaattaattaattaataattacgtgtgaaaataacatgttagtgttgtgttttctcaagttcctggaagagttagagtagctgttaggctg |
412 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3314979 |
aaaaact----attaattaattaataattacgtgtgaaaataacatgttagtgttgtgttttctcaagttcctggaagagttagagtagctgttaggctg |
3315074 |
T |
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