View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9015_low_18 (Length: 413)

Name: NF9015_low_18
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9015_low_18
NF9015_low_18
[»] chr7 (1 HSPs)
chr7 (8-99)||(8550079-8550170)
[»] chr5 (4 HSPs)
chr5 (320-401)||(39269457-39269538)
chr5 (13-103)||(39269167-39269260)
chr5 (185-220)||(39269347-39269382)
chr5 (252-290)||(39269391-39269429)
[»] chr1 (1 HSPs)
chr1 (13-99)||(3324660-3324745)
[»] chr4 (1 HSPs)
chr4 (13-98)||(48996811-48996893)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 8550170 - 8550079
Alignment:
Q  8 agaagcagaggcaaaaggaagcagtgaagaagaagccatcgcaatggtttgtttgtttgagaagaagaagaaagagtaaaagcacttttcag 99  Q
    |||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8550170 agaaccagaggcaaaaggaagtagtgaagaagaagccatcgtaatggtttgtttgtttgagaagaagaagaaagagtaaaagcacttttcag 8550079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 320 - 401
Target Start/End: Original strand, 39269457 - 39269538
Alignment:
Q  320 attgaaattgacttcgaaataaaagtaatttgggttttttaatttcataattgtcttacatagaaaaaatgtttaaattctt 401  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39269457 attgaaattgacttcgaaataagagtaatttgggttttttaatttcataattgtcttacatagaaaaaatgtttaaattctt 39269538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 39269167 - 39269260
Alignment:
Q  13 cagaggcaaaaggaagcagtgaagaagaagccatcgcaatggtttgtttgtttg---agaagaagaagaaagagtaaaagcacttttcagctta 103  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  39269167 cagaggcaaaaggaagtagtgaagaagaagccatcgcgatggtttgtttgtttgagaagaagaagaagaaagagtaaaagcacttttcagctta 39269260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 39269347 - 39269382
Alignment:
Q  185 ctgacactgattctgaactaacttcgctaacttaaa 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  39269347 ctgacactgattctgaactaacttcgctaacttaaa 39269382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 39269391 - 39269429
Alignment:
Q  252 gtactattgttgtctctatctacacctttttcactcaat 290  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  39269391 gtactactattgtctctatctacacctttttcactcaat 39269429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 3324660 - 3324745
Alignment:
Q  13 cagaggcaaaaggaagcagtgaagaagaagccatcgcaatggtttgtttgtttgagaagaagaagaaagagtaaaagcacttttcag 99  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3324660 cagaggcaaaag-aagtagtgaagaagaagccatcgaaatggtttgtttgtttgagaagaagaagaaagagtaaaagcacttttcag 3324745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 48996811 - 48996893
Alignment:
Q  13 cagaggcaaaaggaagcagtgaagaagaagccatcgcaatggtttgtttgtttgagaagaagaagaaagagtaaaagcacttttca 98  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||    
T  48996811 cagaggcaaaagaaagtagtgaagaagaagccatcgtaatggtttgtttgtttg---agaagaagaaagagtaaaagcacttttca 48996893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University