View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9015_low_22 (Length: 392)
Name: NF9015_low_22
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 9 - 372
Target Start/End: Original strand, 6490021 - 6490378
Alignment:
| Q |
9 |
agataatactttacataatttaaagcattctgcaaactttgtcaaattatttttctggattttagtagtattgcactataagaatctagagtatgatgcc |
108 |
Q |
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| T |
6490021 |
agattatactttacataatttaaagcattctgcaaactttgtcaaattatttttctggattttagtagtattgcactataagaatctagagtatgatgcc |
6490120 |
T |
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| Q |
109 |
aaggaactctacatgtgaagttaacactaatttttgtccttttttgcttataagttataagccatttccattaatatttgttctcttacaaaaatgttga |
208 |
Q |
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| T |
6490121 |
aaggaactctacatgtgaagttaacactaatttttgtccttctttgctgataagttataagccatttccatt------tgttctcttacaaaaatgttga |
6490214 |
T |
|
| Q |
209 |
ttactaaatccttattggttcttctttaatttatgttagaagcctgaattttgttatcttaaacatcatgacattgcttacagaatcgagccactctccg |
308 |
Q |
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| T |
6490215 |
ttactaaatccttattggttcttctttaatttatgttagaagcctgaattttgttatcttaaacatcatgacattgcttacagaatcgagccactctccg |
6490314 |
T |
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| Q |
309 |
tttaactttcaataagccttcagtatgtcttctttactaattaccatacaccatttggcacatt |
372 |
Q |
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| T |
6490315 |
tttaactttcaataagccttcagtatgtcttctatactaattaccatacaccatttggcacatt |
6490378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 38700670 - 38700303
Alignment:
| Q |
9 |
agataatactttacataatttaaagcattctgcaaactttgtcaaattatttttctggattttagtagtattgcactataagaatctagagtatgatgcc |
108 |
Q |
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|||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
38700670 |
agattatactttacataatttaaggcattctgcaa-ctttgtcaaattatttttctggattttagtagtattggactacaagaatctagagtatgatgcc |
38700572 |
T |
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| Q |
109 |
aaggaactctacatgtga--------agttaacactaatttttgtccttttttgcttataagttataagccatttccattaatatttgttctcttacaaa |
200 |
Q |
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|||||||||||||||||| ||||||||||| |||| |||||| |||| | ||||||||||||||||||||| | |||||||||||||| |
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| T |
38700571 |
aaggaactctacatgtgattatgtgaagttaacactatttttcgtccttctttgttgataagttataagccatttccact------tgttctcttacaaa |
38700478 |
T |
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| Q |
201 |
aatgttgattactaaatccttattggttcttctttaatttatgttagaagcctgaattttgttatcttaaacatcatga---cattgcttacagaatcga |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
38700477 |
aatgttgattactaaatccttattggttcttctttaatttatgttagaagcctgaattttgttatcttaaacatcataatattattgcttacagaatcga |
38700378 |
T |
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| Q |
298 |
gccactctccgtttaactttcaataagccttcagtatgtcttctttactaattaccatacaccatttggcacatt |
372 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||| |||| |||| ||| ||||||||||||||| |
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| T |
38700377 |
gccactctccatttaactttcaataagtcttcagtatgtcttcttcactagttactatataccatttggcacatt |
38700303 |
T |
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