View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9015_low_24 (Length: 386)
Name: NF9015_low_24
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 56277282 - 56277641
Alignment:
| Q |
14 |
cagagacgtaatctctcatattctcacacgcgttccggccaagcctttgcttagcatgaaatgcatttccagagggtggaacaacatcatttcaagccgt |
113 |
Q |
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| T |
56277282 |
cagagacgtcatctctcatattctcacacgcgttccggccaaacctttgcttagcatgaaatgcatttccagaggttggaaccacatcatttcaagccgt |
56277381 |
T |
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| Q |
114 |
tcattcatcaaagatcaactcaaaaacactaatcttgttttaaatgcttttattgttcaagataggtacatgttctgcaaacacgatgttaaaaccatta |
213 |
Q |
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| T |
56277382 |
tcattcatcaaagatcaactcaaaaacacaaatcttgttttaaatggttttattgttcaagataggtacatgttctgcaaacacgatgttaaaaccatta |
56277481 |
T |
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| Q |
214 |
gttacattcctgtccaacccaaa---aacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgtgcttttgtcatcttg |
310 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || || |
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| T |
56277482 |
gttacattcctgtggaacccaaaaacaacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgttgttttggcttcctg |
56277581 |
T |
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| Q |
311 |
taaaggaattctttgctgccgtacctgttttccttccccaaatccaaccatctatctctg |
370 |
Q |
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| T |
56277582 |
taaaggaattgtttgctgccgtacctgttttccttccccaaatccaaccatctatctctg |
56277641 |
T |
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