View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9015_low_26 (Length: 384)
Name: NF9015_low_26
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_26 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 33 - 384
Target Start/End: Original strand, 4183352 - 4183703
Alignment:
| Q |
33 |
gataataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatt |
132 |
Q |
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| T |
4183352 |
gataataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatt |
4183451 |
T |
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| Q |
133 |
tatcaaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgccatcacaagtggta |
232 |
Q |
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| T |
4183452 |
tatcaaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgccatcacaagtggta |
4183551 |
T |
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| Q |
233 |
actctcccaatatagtctcccttaagattaagaatcagacgatggttattgagccacttgaaactggtaaaggatgcagcggaactgaaaatagaggaga |
332 |
Q |
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| T |
4183552 |
actctcccaatatagtctcccttaagattaagaatcagacgatggttattgagccacttgaaactggtaaaggatgcagcggaactgaaaatagaggaga |
4183651 |
T |
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| Q |
333 |
ttgagcatccagataagtagaacaagggcgcagcagagactaagattaggtc |
384 |
Q |
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| T |
4183652 |
ttgagcatccagataagtagaacaagggcgcagcagagactaagattaggtc |
4183703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 37 - 384
Target Start/End: Original strand, 4744197 - 4744542
Alignment:
| Q |
37 |
ataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatc |
136 |
Q |
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| T |
4744197 |
ataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatc |
4744296 |
T |
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| Q |
137 |
aaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgccatcacaagtggtaactc |
236 |
Q |
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| T |
4744297 |
aaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgccatcacaagtggtaactc |
4744396 |
T |
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| Q |
237 |
tcccaatatagtctcccttaagattaagaatcagacgatggttattgagccacttgaaactggtaaaggatgcagcggaactgaaaatagaggagattga |
336 |
Q |
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| T |
4744397 |
tcccaatatagtctcccttaagattaagaatcagacgatggttattgagccacttgaaactggtaaaggatgcagcagaactgaaaatagaggagattgg |
4744496 |
T |
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| Q |
337 |
gcat-ccagataagtagaacaagggcgcagcagagactaagattaggtc |
384 |
Q |
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| T |
4744497 |
gcatcccagataagtagaacaaggac---gcagagactaagattaggtc |
4744542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 51858287 - 51858110
Alignment:
| Q |
61 |
aatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatcaaaggaggcaatatcttgaattta |
160 |
Q |
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||||||||| ||| ||||||||||||||| |||||||| ||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||| |
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| T |
51858287 |
aatcttatagttattagtgaaacgatcataaactaaggtgaatgaggattgtaaataattttggtctggatttattaaaggaggcaatatcttgaatttt |
51858188 |
T |
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| Q |
161 |
cgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgccatcacaagtggtaactctc |
238 |
Q |
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| T |
51858187 |
ctaatggaagggttacacaaaagagcagaagatgaatcaatcctaacacagagcatgccatcataagttgaaactctc |
51858110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 52 - 234
Target Start/End: Complemental strand, 51829429 - 51829250
Alignment:
| Q |
52 |
aagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatcaaaggaggcaatatc |
151 |
Q |
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|||||| ||||||||||||||| ||||||||||||||| |||||||||| ||||| ||| ||| |||| |||| || ||||||||||||||||| |
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| T |
51829429 |
aagagcaataatcttataattatgagtgaaacgatcatacactaaggtaa---aggttggtatataatttttctctggagttgtcaaaggaggcaatatc |
51829333 |
T |
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| Q |
152 |
ttgaatttacgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgccatcacaagtggtaac |
234 |
Q |
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| T |
51829332 |
ttaaattttctgatggaagggttgcacaagagagctaaagagtaattaaccctaaaacatagcatgccatcacaagtcgtaac |
51829250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 51763296 - 51763411
Alignment:
| Q |
59 |
ataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatcaaaggaggcaatatcttgaatt |
158 |
Q |
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||||| ||||||||| ||||||| ||| |||||||| ||| || ||||||| ||||| |||||| ||||||||| | |||||||||||||||||| |
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| T |
51763296 |
ataatgttataattattagtgaaaagatgatagactagggtgaacaaggtttgaaaataattttgggctggatttatga---gaggcaatatcttgaatt |
51763392 |
T |
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| Q |
159 |
tacgaatggaagggttaca |
177 |
Q |
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| T |
51763393 |
tcctaatggaagggttaca |
51763411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 51763538 - 51763574
Alignment:
| Q |
301 |
aaaggatgcagcggaactgaaaatagaggagattgag |
337 |
Q |
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| T |
51763538 |
aaaggatgcggcggaactgaaaatagaggagattgag |
51763574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 51381898 - 51381980
Alignment:
| Q |
137 |
aaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaagctaaagactcatcgatcctaacacagaccatgcc |
219 |
Q |
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| T |
51381898 |
aaaggaggcaatatcttaaattttctaatggaagggttgcataaaagagctaaagattcatctattccaaaacagagcatgcc |
51381980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 51757105 - 51757158
Alignment:
| Q |
49 |
agaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaa |
102 |
Q |
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| T |
51757105 |
agaaatagcaataatcttgtaattattagtgaaacgatcgtagactaaggtaaa |
51757158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 179
Target Start/End: Original strand, 771956 - 771999
Alignment:
| Q |
136 |
caaaggaggcaatatcttgaatttacgaatggaagggttacaca |
179 |
Q |
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| T |
771956 |
caaaggaggcaatatcttgaatttttgaatggaagggttccaca |
771999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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