View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9015_low_3 (Length: 710)
Name: NF9015_low_3
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_3 |
 | |
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| [»] scaffold0001 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 176 - 700
Target Start/End: Original strand, 8772153 - 8772677
Alignment:
| Q |
176 |
gtattaatggcatattaaatactcgtaattgagtcaagtattgtggctaccatgggttacaatttagatggaaaataaactcaatctacccttccatggt |
275 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||| |
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|
| T |
8772153 |
gtattaatagcgtattaaatactcgtaattgaaccaagtattgtggctaccatgggatacaatttaaatggaaagtaaactcaatctaccctgccatggt |
8772252 |
T |
|
| Q |
276 |
gatgttgataacatatgacaatataagtaacactcaaacggaaccattcagtttcataagttaaataaaaagtcaatttagcaccaaatcttcaattgta |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8772253 |
gatgttgataacatatgacaatataagtaacactcaaacggaaccattcagtttcataagttaaataaaaagtcaattcagcaccaaatcttcaattgta |
8772352 |
T |
|
| Q |
376 |
accctatgtgatcaaacatccaaacgcaacgactgaagtacaaacaaataaaatgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaa |
475 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8772353 |
accctatgtgatcaaacatccaaacacaatgactgaagtacaaacaaataaaatgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaa |
8772452 |
T |
|
| Q |
476 |
cttcttgttcaaaaacagagagaactttccctattgagtcttaaattagctagccaaatattataagacaataggaaactaaatatatcaacagccagct |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
8772453 |
cttcttgttcaaaaacagagagaactttcccaattgagtcttaaattagctagccaaaaattataagacaataggaaactaaatatatcagcagccagat |
8772552 |
T |
|
| Q |
576 |
tcaatcagtttgagcagagtagaaacaagactgcgatgacggttgttgtccataaccagcaacattcatgacttgtgctaagaggccaacacaggaagtt |
675 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
8772553 |
tcaactagtttgagcagagtagaaacaagactgcgatgactgttgttgtccataaccagcaacattcatgacttgtgccaagagcccaacacaggaagtt |
8772652 |
T |
|
| Q |
676 |
gatgattcaccaccatgatgtccat |
700 |
Q |
| |
|
|||||||||||||||||| |||||| |
|
|
| T |
8772653 |
gatgattcaccaccatgaagtccat |
8772677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 176 - 700
Target Start/End: Complemental strand, 7558563 - 7558027
Alignment:
| Q |
176 |
gtattaatggcatattaaatactcgtaattgagtcaagtattgtggctaccatgggttacaatttagatggaaaataaactcaatctacccttccatggt |
275 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||| |
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|
| T |
7558563 |
gtattaatagcgtattaaatactcgtaattgaaccaagtattgtggctaccatgggatacaatttatatggaaagtaaactcaatctaccctgccatggt |
7558464 |
T |
|
| Q |
276 |
gatgttgataacatatgacaatataagtaacactcaaacggaaccattcagtttcataagttaaataaaaagtcaatttagcaccaaatcttcaattgta |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7558463 |
gatgttgataacatatgacaatataagtaacactcaaacggaaccattcattttcataagttaaataaaaagtcaattcagcaccaaatcttcaattgta |
7558364 |
T |
|
| Q |
376 |
accctatgtgatcaaacatccaaacgcaacgactgaagtacaaacaaataaaatgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaa |
475 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7558363 |
accctatgtgatcaaacatccaaacacaatgactgaagtacaaacaaataaaatgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaa |
7558264 |
T |
|
| Q |
476 |
cttcttgttcaaa------------aacagagagaactttccctattgagtcttaaattagctagccaaatattataagacaataggaaactaaatatat |
563 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7558263 |
ctttttgttcaaaaacattttgttcaacagagagaactttcccaattgagtcttaaattagctagccaaaaattataagacaataggaaactaaatatat |
7558164 |
T |
|
| Q |
564 |
caacagccagcttcaatcagtttgagcagagtagaaacaagactgcgatgacggttgttgtccataaccagcaacattcatgacttgtgctaagaggcca |
663 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
7558163 |
cagcagccagattcaactagtttgagcagagtagaaacaagactgcgatgactgttgttgtccataaccagcaacattcatgacttgtgccaagagccca |
7558064 |
T |
|
| Q |
664 |
acacaggaagttgatgattcaccaccatgatgtccat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7558063 |
acacaggaagttgatgattcaccaccatgaagtccat |
7558027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 440 - 700
Target Start/End: Complemental strand, 19722014 - 19721754
Alignment:
| Q |
440 |
ttgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaacagagagaactttccctattgagtcttaaattagctagccaaatattat |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19722014 |
ttgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaacagagagaacttttcctattgagtcttaaattagctagccaaaaattat |
19721915 |
T |
|
| Q |
540 |
aagacaataggaaactaaatatatcaacagccagcttcaatcagtttgagcagagtagaaacaagactgcgatgacggttgttgtccataaccagcaaca |
639 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19721914 |
aagacaataggaaaataaatatatcagcagccagcttcaatcaaattgagcagagtagaaacaagactgcgatgattgttgttgtccataaccagcaaca |
19721815 |
T |
|
| Q |
640 |
ttcatgacttgtgctaagaggccaacacaggaagttgatgattcaccaccatgatgtccat |
700 |
Q |
| |
|
||||||| || ||| ||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19721814 |
ttcatgatttatgccaagagcccaacacaggaagttgatgattcaccaccatgaagtccat |
19721754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 176 - 319
Target Start/End: Complemental strand, 19722161 - 19722018
Alignment:
| Q |
176 |
gtattaatggcatattaaatactcgtaattgagtcaagtattgtggctaccatgggttacaatttagatggaaaataaactcaatctacccttccatggt |
275 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
19722161 |
gtattaatagcgtattaaatactcgtaattgagtcaagtactgtggctaccatgggctacaatttagatggaaagtaaactcaatctacgctgccatggt |
19722062 |
T |
|
| Q |
276 |
gatgttgataacatatgacaatataagtaacactcaaacggaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19722061 |
gatgttgataacatatgacaatataagtaacactcaaacggaac |
19722018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 46 - 152
Target Start/End: Complemental strand, 19722369 - 19722261
Alignment:
| Q |
46 |
cacttacatttacatggttcgatggttcaatttaaannnnnnncaaattcaaaattttctttttataatag--aacctcctatgaaaaacggttttcaat |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19722369 |
cacttacatttacatggttcgatggttcaatttaattttttttcaaatttaaaattttctttttataatagtgaacctcctatgaaaaacggttttcaat |
19722270 |
T |
|
| Q |
144 |
ggtaataaa |
152 |
Q |
| |
|
| ||||||| |
|
|
| T |
19722269 |
gataataaa |
19722261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 536 - 588
Target Start/End: Original strand, 35808013 - 35808065
Alignment:
| Q |
536 |
ttataagacaataggaaactaaatatatcaacagccagcttcaatcagtttga |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
35808013 |
ttataagacaataggaaactaaatatatcagctgccaacttcaatcagtttga |
35808065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 262 - 422
Target Start/End: Original strand, 33199915 - 33200074
Alignment:
| Q |
262 |
tacccttccatggtgat--gttgataacatatgacaatataagtaacactcaaacggaaccattcagtttcataagttaaataaaaagtcaatttagcac |
359 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
33199915 |
taccctgccatggtgataagttgataacatattacaatctaatcaacactcaaacggaaccattcagtttcacaagttaaataaaaagtcaattcagcac |
33200014 |
T |
|
| Q |
360 |
caaatcttcaattgtaaccctatgtgatcaaacatccaaacgcaacgactgaagtacaaacaa |
422 |
Q |
| |
|
||||||| |||||| ||||||||| ||| | |||||||| ||||| |||||||||||||| |
|
|
| T |
33200015 |
caaatctgcaattgcaaccctatgagattgatcatccaaa---aacgattgaagtacaaacaa |
33200074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 23209173 - 23209210
Alignment:
| Q |
11 |
gcagagaacctcaacaaatgcttcaggaaaggaaacac |
48 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
23209173 |
gcagagaacctcaacaaaggcttcagggaaggaaacac |
23209210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 22756397 - 22756470
Alignment:
| Q |
234 |
acaatttagatggaaaataaactcaatctacccttccatggtgatgttgataacatatgacaatataagtaaca |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22756397 |
acaatttagatggaaagtaaactcaatctaccctaccatggtgatgttgataacatataacaatataagtaaca |
22756470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 22730306 - 22730233
Alignment:
| Q |
234 |
acaatttagatggaaaataaactcaatctacccttccatggtgatgttgataacatatgacaatataagtaaca |
307 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22730306 |
acaatttagatggaaagtaaactcaatctacactgccatggtgatgttgataacatacgacaatataagtaaca |
22730233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 424 - 521
Target Start/End: Original strand, 22756518 - 22756615
Alignment:
| Q |
424 |
taaaatgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaacagagagaactttccctattgagtcttaaat |
521 |
Q |
| |
|
||||||||||||| ||||||| | | |||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||| |
|
|
| T |
22756518 |
taaaatgctacatggattgtatttatgaaattcaaattaagatatcagagaacttcttgttcaaaaaaagagagaactttctctatcgagtcgtaaat |
22756615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 424 - 521
Target Start/End: Complemental strand, 22730174 - 22730078
Alignment:
| Q |
424 |
taaaatgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaacttcttgttcaaaaacagagagaactttccctattgagtcttaaat |
521 |
Q |
| |
|
||||||||||||| ||||||| ||| |||| |||||||| |||| ||||||||||||| ||||||| ||||||||||||| |||| ||||| ||||| |
|
|
| T |
22730174 |
taaaatgctacatggattgtatttgtgaaatccaaattaagatattagagaacttcttg-tcaaaaaaagagagaactttctctatcgagtcgtaaat |
22730078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 224
Target Start/End: Complemental strand, 22730711 - 22730583
Alignment:
| Q |
97 |
aaattttctttttataatag--aacctcctatgaaaaacggttttcaatggtaataaatgacataaaaatgctattaaaatgtattaatggcatattaaa |
194 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||||| ||||||| ||||| |||||| | | |||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
22730711 |
aaattttcttttcataatagtgaacctgctatgagaaacggtgttcaaccgtaatagagggcataaaaatgctattaaagcgtattaaaagcgtattaaa |
22730612 |
T |
|
| Q |
195 |
tactcgtaattgagtcaagtattgtggcta |
224 |
Q |
| |
|
|| | ||||||| ||||||||||| |||| |
|
|
| T |
22730611 |
gacac-taattgaatcaagtattgtagcta |
22730583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 481
Target Start/End: Complemental strand, 65639 - 65585
Alignment:
| Q |
427 |
aatgctacataaattgtatctgtaaaatgcaaattaaaatatcagagaacttctt |
481 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
65639 |
aatgctacatgaattgtatctctaaaatgcaaattaaaaaatcagagaatttctt |
65585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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