View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9015_low_31 (Length: 347)

Name: NF9015_low_31
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9015_low_31
NF9015_low_31
[»] chr4 (15 HSPs)
chr4 (7-331)||(27504907-27505232)
chr4 (96-217)||(27461178-27461298)
chr4 (97-255)||(27480557-27480717)
chr4 (59-236)||(27522723-27522897)
chr4 (276-331)||(27510326-27510381)
chr4 (7-122)||(27487914-27488032)
chr4 (210-253)||(27488050-27488093)
chr4 (7-44)||(47042657-47042694)
chr4 (7-43)||(20485684-20485720)
chr4 (7-47)||(27461101-27461141)
chr4 (7-43)||(51928893-51928929)
chr4 (7-38)||(24354897-24354928)
chr4 (7-50)||(27480448-27480491)
chr4 (66-155)||(27499815-27499904)
chr4 (7-43)||(27477365-27477401)
[»] chr5 (2 HSPs)
chr5 (65-146)||(1753896-1753977)
chr5 (7-43)||(13912431-13912467)
[»] chr7 (1 HSPs)
chr7 (7-47)||(37175798-37175838)
[»] chr8 (3 HSPs)
chr8 (7-44)||(28811056-28811093)
chr8 (7-43)||(13659622-13659658)
chr8 (7-43)||(13718264-13718300)
[»] chr2 (3 HSPs)
chr2 (7-44)||(35808847-35808884)
chr2 (7-43)||(26204085-26204121)
chr2 (7-47)||(42348127-42348167)
[»] chr1 (1 HSPs)
chr1 (7-43)||(42396948-42396984)
[»] chr6 (2 HSPs)
chr6 (7-44)||(22685789-22685826)
chr6 (7-44)||(22753242-22753279)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 27505232 - 27504907
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacgaattgttannnnnnnaataacaaaattaagttaaaaatagttaattctacattttataatcaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||| || | |||| |||||||||||    
T  27505232 gggtttccccgcgagagttcgaatctctcaggtgacgaattgttattttcttaataacaaaattaagttaaaaatagtcaactttacaatttataatcaa 27505133  T
Q  107 attctttaatgacaaagttgtttttcttttgctttgaaatgactagttacaattttgctctcaaaaaagaaagattaatttcaattttgctgtaaaaaat 206  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||  || ||||||| |||||||||||||||||    
T  27505132 attctttaatgacaaagttgtttttcttttgctttgaaattactagttacatttttgctctaaaaaaagagcgactaatttctattttgctgtaaaaaat 27505033  T
Q  207 gtgtaatttcaatttatgaacttgggactagccacatattttaccatctgctag-nnnnnnnctttctttagatctattacagattctgtataattgagt 305  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||        |||| |||||||||||||||||||||||||||||||||    
T  27505032 gtgtaatttcaatttatgaacatgggactagccacatattttaccatctgctagttttttttctttgtttagatctattacagattctgtataattgagt 27504933  T
Q  306 tcatttgggacaatgccaaacattag 331  Q
    ||||||||||||||||||||||||||    
T  27504932 tcatttgggacaatgccaaacattag 27504907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 27461178 - 27461298
Alignment:
Q  96 tttataatcaaattctttaatgacaaagttgtttttcttttgctttgaaatgactagttacaattttgctctcaaaaaagaaagattaatttcaattttg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  27461178 tttataatcaaattctttaatgacaaagttgtttttcttttgctttgaaatgactagttacaattttgctctcaaaaaagaaag--taatttcaattttg 27461275  T
Q  196 ctgt-aaaaaatgtgtaatttca 217  Q
    |||| ||||||||||||||||||    
T  27461276 ctgtaaaaaaatgtgtaatttca 27461298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 97 - 255
Target Start/End: Original strand, 27480557 - 27480717
Alignment:
Q  97 ttataatcaaattctttaatgacaaagttgtttttcttttgctttgaaatgactagttacaattttgctctcaaaaaagaaagattaatttcaattttgc 196  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  27480557 ttataatcaaattcttcaatgacaaagttgtttttcttttgctttgatatgactagttacagttttgctctcaaaagagaaagactaatttcaattttgc 27480656  T
Q  197 tgtaaaa--aatgtgtaatttcaatttatgaacttgggactagccacatattttaccatct 255  Q
    |||||||  || ||| || ||| |||||||||| |||||||  |||||| |||||||||||    
T  27480657 tgtaaaaacaaagtgcaagttccatttatgaacatgggactctccacatcttttaccatct 27480717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 236
Target Start/End: Complemental strand, 27522897 - 27522723
Alignment:
Q  59 aataacaaaattaagttaaaaatagttaattctacattttataatcaaattctttaatgacaaagttgtttttcttttgctttgaaatgactagttacaa 158  Q
    ||||| |||| | |||||||||||||||  ||||||||||||| ||||||||||| || | | | || ||||||||||| | ||||||| |||   ||||    
T  27522897 aataaaaaaaatgagttaaaaatagttacctctacattttatagtcaaattctttgataatatattt-tttttcttttgttgtgaaatgtctaa--acaa 27522801  T
Q  159 ttttgctctcaaaaaagaaagattaatttcaattttgctgtaaaaaatgtgtaatttcaatttatgaacttgggacta 236  Q
    ||||| |||||||||||||||   |||||||||||||||||||||||| | |||| ||||||||| ||| | ||||||    
T  27522800 ttttgttctcaaaaaagaaaggcaaatttcaattttgctgtaaaaaatctataatctcaatttataaacataggacta 27522723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 27510381 - 27510326
Alignment:
Q  276 agatctattacagattctgtataattgagttcatttgggacaatgccaaacattag 331  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  27510381 agatctattacagattctgtataattgagttcacttgtgacaatgccaaacattag 27510326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 27487914 - 27488032
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacgaattg-----ttannnnnnnaataacaaaattaagttaaaaatagttaattctacattttata 101  Q
    |||||||||||||||||||||||||||||||| |||||||||     ||        ||||||||| ||  ||||||||||||||| ||||||||||| |    
T  27487914 gggtttccccgcgagagttcgaatctctcaggcgacgaattgaattttttgttttttaataacaaagtt-ggttaaaaatagttaactctacatttta-a 27488011  T
Q  102 atcaaattctttaatgacaaa 122  Q
    |||||||||||||||||||||    
T  27488012 atcaaattctttaatgacaaa 27488032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 27488050 - 27488093
Alignment:
Q  210 taatttcaatttatgaacttgggactagccacatattttaccat 253  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  27488050 taatttcaatttatgaacatgggactagctacatattttaccat 27488093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 47042657 - 47042694
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacga 44  Q
    |||||||||||||||||||||||||||||||| |||||    
T  47042657 gggtttccccgcgagagttcgaatctctcaggcgacga 47042694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 20485720 - 20485684
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacg 43  Q
    |||||||||||||||||||||||||||||||| ||||    
T  20485720 gggtttccccgcgagagttcgaatctctcaggcgacg 20485684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 27461101 - 27461141
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacgaatt 47  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  27461101 gggtttccctgcgagagttcgaatctctcaggcgacgaatt 27461141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 51928893 - 51928929
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacg 43  Q
    |||||||||||||||||||||||||||||||| ||||    
T  51928893 gggtttccccgcgagagttcgaatctctcaggcgacg 51928929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 24354897 - 24354928
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcagg 38  Q
    ||||||||||||||||||||||||||||||||    
T  24354897 gggtttccccgcgagagttcgaatctctcagg 24354928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 27480448 - 27480491
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacgaattgtt 50  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||    
T  27480448 gggtttccccgtgagagttcgaatctctcaggcaacgaattgtt 27480491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 27499904 - 27499815
Alignment:
Q  66 aaattaagttaaaaatagttaattctacattttataa-tcaaattctttaatgacaaagttgtttttcttttgctttgaaatgactagtta 155  Q
    ||||| |||||||||| ||||| | |||||||| | | |||||||||||||| |||||  ||||||||||| | ||||||| |||||||||    
T  27499904 aaattgagttaaaaat-gttaactttacatttttttagtcaaattctttaataacaaaagtgtttttctttagttttgaaacgactagtta 27499815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 27477365 - 27477401
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacg 43  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  27477365 gggtttccccgcaagatttcgaatctctcaggtgacg 27477401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 1753896 - 1753977
Alignment:
Q  65 aaaattaagttaaaaatagttaattctacattttataatcaaattctttaatgacaaagttgtttttcttttgctttgaaat 146  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||| |||| | ||||||    
T  1753896 aaaattgagttaaaaatagttaattctacattttatagtcaaattctttgataacaaaattgtttttcgtttgttgtgaaat 1753977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 13912431 - 13912467
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacg 43  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13912431 gggtttccccgcgagagttcgaatctctcaggcgacg 13912467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 37175798 - 37175838
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacgaatt 47  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  37175798 gggtttccccgcgagagttcgaatctctcaggcgacgaatt 37175838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 28811093 - 28811056
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacga 44  Q
    |||||||||||||||||||||||||||||||| |||||    
T  28811093 gggtttccccgcgagagttcgaatctctcaggcgacga 28811056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 13659658 - 13659622
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacg 43  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13659658 gggtttccccgcgagagttcgaatctctcaggcgacg 13659622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 13718300 - 13718264
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacg 43  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13718300 gggtttccccgcgagagttcgaatctctcaggcgacg 13718264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 35808847 - 35808884
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacga 44  Q
    |||||||||||||||||||||||||||||||| |||||    
T  35808847 gggtttccccgcgagagttcgaatctctcaggcgacga 35808884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 26204085 - 26204121
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacg 43  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26204085 gggtttccccgcgagagttcgaatctctcaggcgacg 26204121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 42348167 - 42348127
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacgaatt 47  Q
    |||||||||||||||||||||||||||||||| | ||||||    
T  42348167 gggtttccccgcgagagttcgaatctctcaggcgtcgaatt 42348127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 42396984 - 42396948
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacg 43  Q
    |||||||||||||||||||||||||||||||| ||||    
T  42396984 gggtttccccgcgagagttcgaatctctcaggcgacg 42396948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 22685826 - 22685789
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacga 44  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  22685826 gggtttccccgtgagagttcgaatctcttaggtgacga 22685789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 22753242 - 22753279
Alignment:
Q  7 gggtttccccgcgagagttcgaatctctcaggtgacga 44  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  22753242 gggtttccccgtgagagttcgaatctcttaggtgacga 22753279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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