View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9015_low_32 (Length: 346)
Name: NF9015_low_32
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 49 - 340
Target Start/End: Original strand, 23874738 - 23875029
Alignment:
| Q |
49 |
tttcaactttcaaaatcaatccgcatcatactcaaaccaatatcctgaccgtctatcacttatatccttgaaacggataaaacaattccacgtcaccgat |
148 |
Q |
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| T |
23874738 |
tttcaactttcaaaatcaatccgcatcatactcaaaccaatatcctgaccgtctatcacttatatccttgaaacggataaaacaatcccacgtcaccgat |
23874837 |
T |
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| Q |
149 |
ccaaaacgaacctaactagccaatagaaacacgaaataaccgtcttatatgtcagatcgatccgcgtcttcgtttactcaaagtaagatcgtgaccgtct |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23874838 |
ccaaaacgaacctaactagccaatagaaacacgaaataaccgtcttatatgtcagatcgatccgcgtcttcgtttactcaaagtaagatcgtgaccgtct |
23874937 |
T |
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| Q |
249 |
attgtcatattcctatggctgtatttaacggatcaaaagaattccacatcatcgatccgcggcaaacctcattatccaatagaaacacgaaa |
340 |
Q |
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| T |
23874938 |
attgtcatatccctattgctgtatttaacggatcaaaagaattccacatcatcgatccgcggcaaacctcattatccaatagaaacacgaaa |
23875029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 23423998 - 23423934
Alignment:
| Q |
120 |
aacggataaaacaattccacgtcaccgatccaaaacgaacctaactagccaatagaaacacgaaa |
184 |
Q |
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| T |
23423998 |
aacggataaaacaattccacgtcaccgatccgcgacggacctcattagccaatagaaacacgaaa |
23423934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 26827494 - 26827562
Alignment:
| Q |
268 |
tgtatttaacggatcaaaagaattccacatcatcgatccgcggcaaacctcattatccaatagaaacac |
336 |
Q |
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| T |
26827494 |
tgtaattaacggattaaaagaattccacatcatcgatccgcaacaaacctcaccaaccaatagaaacac |
26827562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Complemental strand, 23448634 - 23448559
Alignment:
| Q |
125 |
ataaaacaattccacgtcaccgatccaaaacgaacctaactagccaatagaaacacgaaataaccgtcttatatgt |
200 |
Q |
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||||||||| |||||||||||||||| || |||||||| ||||||||||||||||| | || |||||||||||| |
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| T |
23448634 |
ataaaacaagtccacgtcaccgatccgcaaggaacctaatcagccaatagaaacacgagaaaaacgtcttatatgt |
23448559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 23868349 - 23868419
Alignment:
| Q |
268 |
tgtatttaacggatcaaaagaattccacatcatcgatccgcggcaaacctcattatccaatagaaacacga |
338 |
Q |
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| T |
23868349 |
tgtaattaacggattaaaagattaccacgtcatcgatccgcagcgaacctcactagccaatagaaacacga |
23868419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 24306861 - 24306921
Alignment:
| Q |
120 |
aacggataaaacaattccacgtcaccgatccaaaacgaacctaactagccaatagaaacac |
180 |
Q |
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| T |
24306861 |
aacggataaaacagttccacgtcactgatccgcaacaaacctcattagccaatagaaacac |
24306921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 23401726 - 23401776
Alignment:
| Q |
288 |
aattccacatcatcgatccgcggcaaacctcattatccaatagaaacacga |
338 |
Q |
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| T |
23401726 |
aattccacgtcatcgatccggggcaaacttcactacccaatagaaacacga |
23401776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 23423999 - 23423934
Alignment:
| Q |
274 |
taacggatcaaaagaattccacatcatcgatccgcggcaaacctcattatccaatagaaacacgaaa |
340 |
Q |
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|||||||| |||| |||||||| ||| ||||||||| | ||||||||| ||||||||||||||||| |
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| T |
23423999 |
taacggat-aaaacaattccacgtcaccgatccgcgacggacctcattagccaatagaaacacgaaa |
23423934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 23401685 - 23401744
Alignment:
| Q |
90 |
atcctgaccgtctatcacttatatccttgaaacggataaaacaattccacgtcaccgatcc |
150 |
Q |
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| T |
23401685 |
atcctgcccgtctatcact-atctccttttaacggatgaaacaattccacgtcatcgatcc |
23401744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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