View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9015_low_5 (Length: 562)
Name: NF9015_low_5
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Original strand, 26845663 - 26846191
Alignment:
| Q |
17 |
caataaccctcagaaccaacttgctcactccctctttactcatagaaagagaatcacacatggagagagtcagaaaataaataggtcttgtaatggcact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26845663 |
caataaccctcagaaccaacttgctcactccctctttactcatagaaagagaatcacacatggagagagtcagaaaataaataggtcttgtaatggcact |
26845762 |
T |
|
| Q |
117 |
catccaaatttttctgaaagtcagataacacactaaatactcatctctgaccaaatcttagctgttctctctgatccatgatgcaaaatctcacaccaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26845763 |
catccaaatttttctgaaagtcagataacacactaaatactcatctctgaccaaatcttagctgttctctctgatccatgatgcaaaatctcacaccaaa |
26845862 |
T |
|
| Q |
217 |
cgcccataattcatcagatcccaatgtagtagaaatagcacgcacttacaggcggcattagttgatctcggccattgatttaaaatcgatcggctcacat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26845863 |
cgcccataattcatcagatcccaatgtagtagaaatagcacgcacttacacgc---attagttgatctcggccattgatttaaaatcgatcggctcacat |
26845959 |
T |
|
| Q |
317 |
tgcacctttcctacattaaatttggaatctaaatcccataattcttttgtccccatccccactttgccttcaaaacaaaacccaaatctccaaaacgctc |
416 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26845960 |
tgcacctttcctacattaactttggaatctaaatcccataattcttttgtccccatccccactttgccttcaaaacaaaacccaaatctccaaaacgctc |
26846059 |
T |
|
| Q |
417 |
aaaagtaaggagatgaagatccagtgtgatgcatgtcacaaacaagaggcctccttgttttgccctgcagatgaagcagctctctgcaatcaatgtgatc |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26846060 |
aaaagtaaggagatgaagatccagtgtgatgcatgtcacaaacaagaggcctccttgttttgccctgcagatgaagcagctctctgcaatcaatgtgatc |
26846159 |
T |
|
| Q |
517 |
gcaatatccactatgccaacaaggtctctgct |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26846160 |
gcaatatccactatgccaacaaggtctctgct |
26846191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University