View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9015_low_50 (Length: 243)
Name: NF9015_low_50
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 121 - 228
Target Start/End: Original strand, 9213338 - 9213445
Alignment:
| Q |
121 |
gttggtgttgctaatggtggacaatattctgaatcagaattttcagaatcaatagaacatgatgaaacaatgttattcatttgttgcaatttttggttca |
220 |
Q |
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| T |
9213338 |
gttggtgttgctaatggtggacaatattctgaatcagaattttcagaatcaatagaacatgatgaaacaatgttattcatttgttgcaatttttggttca |
9213437 |
T |
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| Q |
221 |
ttgttttt |
228 |
Q |
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| T |
9213438 |
ttgttttt |
9213445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 9194690 - 9194627
Alignment:
| Q |
126 |
tgttgctaatggtggacaatattctgaatcagaattttcagaatcaatagaacatgatgaaaca |
189 |
Q |
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| T |
9194690 |
tgttgctaacagtggacaatattctgaatcagaatcttcagaatctaaagaacatgatgaaaca |
9194627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 9194812 - 9194755
Alignment:
| Q |
1 |
tctctcctttgtctctctgcttccacatagttcgtcggtgtttgaattcctgctaatg |
58 |
Q |
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| T |
9194812 |
tctctcctttgtctctctgcttccacatggttcatcggtgtttgagttcctgttaatg |
9194755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 9213218 - 9213275
Alignment:
| Q |
1 |
tctctcctttgtctctctgcttccacatagttcgtcggtgtttgaattcctgctaatg |
58 |
Q |
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| T |
9213218 |
tctctcctttgtctctctgcttccacatggttcattggtgtttgagttcctgataatg |
9213275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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