View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9015_low_54 (Length: 240)

Name: NF9015_low_54
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9015_low_54
NF9015_low_54
[»] chr6 (3 HSPs)
chr6 (6-126)||(23263025-23263148)
chr6 (129-223)||(23264593-23264686)
chr6 (123-151)||(23904441-23904469)
[»] chr7 (1 HSPs)
chr7 (123-155)||(26619191-26619223)
[»] chr5 (3 HSPs)
chr5 (123-155)||(30786246-30786278)
chr5 (123-155)||(31571008-31571040)
chr5 (127-155)||(42076046-42076074)
[»] chr3 (1 HSPs)
chr3 (123-155)||(9633531-9633563)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 23263025 - 23263148
Alignment:
Q  6 tataacaaggttttggttgagagggacaattatgccttctag---gtgggaattgtgtttgataaacatcctttatatttttaacaattgcaaaatcatt 102  Q
    |||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23263025 tataacaaggttttggttgagagggacaattatgccttctataatgtgggaattgtgtttgataaacatcctttatatttttaacaattgcaaagtcatt 23263124  T
Q  103 gggcactctatttagcaatccaag 126  Q
    ||||||||||||||||||||||||    
T  23263125 gggcactctatttagcaatccaag 23263148  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 23264593 - 23264686
Alignment:
Q  129 ttactagatctcaattatgttgtagtgnnnnnnnnaagtatattattaatgggaaagttttactcccacgccaaacttcttcgttaacgagtatc 223  Q
    |||||||||||||||||||||||||||        ||||||||||||| |||||||||||||||||||| |||||||||||| | || |||||||    
T  23264593 ttactagatctcaattatgttgtagtgttttttt-aagtatattattattgggaaagttttactcccacaccaaacttcttcatcaaggagtatc 23264686  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 23904441 - 23904469
Alignment:
Q  123 caagtgttactagatctcaattatgttgt 151  Q
    |||||||||||||||||||||||||||||    
T  23904441 caagtgttactagatctcaattatgttgt 23904469  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 26619191 - 26619223
Alignment:
Q  123 caagtgttactagatctcaattatgttgtagtg 155  Q
    ||||||||||||||| |||||||||||||||||    
T  26619191 caagtgttactagatgtcaattatgttgtagtg 26619223  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 30786278 - 30786246
Alignment:
Q  123 caagtgttactagatctcaattatgttgtagtg 155  Q
    ||||||||||||||||| |||||||||||||||    
T  30786278 caagtgttactagatcttaattatgttgtagtg 30786246  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 31571040 - 31571008
Alignment:
Q  123 caagtgttactagatctcaattatgttgtagtg 155  Q
    ||||||||||||||| |||||||||||||||||    
T  31571040 caagtgttactagatgtcaattatgttgtagtg 31571008  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 42076074 - 42076046
Alignment:
Q  127 tgttactagatctcaattatgttgtagtg 155  Q
    |||||||||||||||||||||||||||||    
T  42076074 tgttactagatctcaattatgttgtagtg 42076046  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 9633531 - 9633563
Alignment:
Q  123 caagtgttactagatctcaattatgttgtagtg 155  Q
    |||||||||||| ||||||||||||||||||||    
T  9633531 caagtgttactaaatctcaattatgttgtagtg 9633563  T

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