View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9015_low_55 (Length: 240)
Name: NF9015_low_55
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 27802574 - 27802371
Alignment:
| Q |
22 |
tgtatttacgcacatacatgataaatatatccatatgcctgagttaggagataagatctcaagatagctaaatgtgaatttgatatttt---gaaatatc |
118 |
Q |
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| T |
27802574 |
tgtatttacgcacatacatgataaatatatccatatgcttgagttaggagataagatctcaagatagctaaatgtgaatttgatatttttttgaaatatc |
27802475 |
T |
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| Q |
119 |
acggtgtgactacattaaagtcacacactagattgaagctaacatttaaagtttaaaaaactgctatgaaaagggctataaatgtacggtgatggtgatt |
218 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| |
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| T |
27802474 |
acggtgtgactacattaaagtcacacactacattgaagctaacatttaaagtttaaaaaactactatgaaaagggctataaatgtactatggtggtgatt |
27802375 |
T |
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| Q |
219 |
catc |
222 |
Q |
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|||| |
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| T |
27802374 |
catc |
27802371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 27809946 - 27809743
Alignment:
| Q |
19 |
atctgtatttacgcacatacatgataaatatatccatatgcctgagttaggagataagatctcaagatagctaaatgtgaatttgatattttgaaatatc |
118 |
Q |
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|||||||||||||||||| ||||| ||||||||||||| |||||||| |||||| |||| ||||||| |||||||||||||||| ||||||||||| || |
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| T |
27809946 |
atctgtatttacgcacatccatgaaaaatatatccatactcctgagttgggagatgagatatcaagattgctaaatgtgaatttggtattttgaaatgtc |
27809847 |
T |
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| Q |
119 |
acggtgtgactacattaaagtcacacactagattgaagctaacatttaaagtttaaaaaactgctatgaaaagggctataaatgtacggtgatggtgatt |
218 |
Q |
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| T |
27809846 |
acggtgtgaccacattaaagtcacagactagattgaagctaacatttgaagcttaaaaaactgctatgaaaagggctataaatgtacggtgatggtgatt |
27809747 |
T |
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| Q |
219 |
catc |
222 |
Q |
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|||| |
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| T |
27809746 |
catc |
27809743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 27799131 - 27798953
Alignment:
| Q |
22 |
tgtatttacgcacatacatgataaatatatccatatgcctgagttaggagataagatctcaagatagctaaatgtgaatttgatattttgaaatatcacg |
121 |
Q |
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|||||||| ||| |||||||| |||||||||||||| | || |||||||||||||||| ||| |||||| ||||||||||||||||||||||||| |
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| T |
27799131 |
tgtatttatgcatatacatgaaaaatatatccatat-----atttgggagataagatctcaaaataattaaatgagaatttgatattttgaaatatcacg |
27799037 |
T |
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| Q |
122 |
gtgtgactacattaaagtcacacactagattgaagctaacatttaaagtttaaaaaactgctatgaaaagggctataaatgtac |
205 |
Q |
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||||||| |||||| | ||| |||||||||| |||||||| ||| ||||||| |||||| ||| ||| |||||||||| |
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| T |
27799036 |
gtgtgaccacattagatgtacatcgtagattgaagttaacatttgaagcttaaaaatctgctacaaaaggggtaataaatgtac |
27798953 |
T |
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