View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9015_low_57 (Length: 238)
Name: NF9015_low_57
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_57 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31381388 - 31381170
Alignment:
| Q |
1 |
gattattacacacaagaacacgtcaccgtccctatcannnnnnngttctcatcatcatcattttctaattctcataatccttccttaaactgaatcagca |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31381388 |
gattattacacacatgaacacgtcaccgtccctatcatttttttgttctcatcatcatcattttctaattctcataatccttccttaaactgaatcagca |
31381289 |
T |
|
| Q |
101 |
tcatcaccaccaaccagcattctgnnnnnnnnnnnnnnnntacaatggcgactcgcatgatcctcagaggagcacttaagaaacgcaccttcttcttccc |
200 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31381288 |
tcatcaccaccaaccattattctg---aaaaaagaaaaaatacaatggcgactcgcatgatcctcagaggagcacttaagaaacgcaccttcttcttccc |
31381192 |
T |
|
| Q |
201 |
tccatccttttccacttctcga |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31381191 |
tccatccttttccacttctcga |
31381170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University