View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9015_low_60 (Length: 221)
Name: NF9015_low_60
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_60 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 24990811 - 24990624
Alignment:
| Q |
17 |
acattctggatccggacacttgattttaatcactttttcttttatttgaatcttcacatacttggatatgcacttagtacaaaagggatgattgcataaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24990811 |
acattctggatccggacacttgattttaaccactttttcttttatttaaatcttcacatacttggatatgcacttagtacaaaagggatgattgcataaa |
24990712 |
T |
|
| Q |
117 |
ccggttgaaaacatattagagtttgttacagaatcaaagcatataccacaacagattttagaggattgaccttgttctatagctgtct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24990711 |
ccggttgaaaacatattagagtttgttacagaatcaaagcatataccacaacagattttagaggattgaccttgttctatagctgtct |
24990624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 25014348 - 25014161
Alignment:
| Q |
17 |
acattctggatccggacacttgattttaatcactttttcttttatttgaatcttcacatacttggatatgcacttagtacaaaagggatgattgcataaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25014348 |
acattctggatccggacacttgattttaaccactttttcttttatttcaatcttcacatacttggatatgcacttagtacaaaagggatgattgcataaa |
25014249 |
T |
|
| Q |
117 |
ccggttgaaaacatattagagtttgttacagaatcaaagcatataccacaacagattttagaggattgaccttgttctatagctgtct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25014248 |
ccggttgaaaacatattagagtttgttacagaatcaaagcatataccacaacagattttagaggattgaccttgttctatagctgtct |
25014161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 25013230 - 25013054
Alignment:
| Q |
17 |
acattctggatccggacacttgattttaatcactttttcttttatttgaatcttcacatacttggatatgcacttagtacaaaagggatgattgcataaa |
116 |
Q |
| |
|
|||||||||||| || ||||| | ||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25013230 |
acattctggatctgggcacttcactttcacaactttttcttttatttgaatctttgcatacttggatatgcttatagtacaaaagggatgattgcataaa |
25013131 |
T |
|
| Q |
117 |
ccggttgaaaacatattagagtttgttacagaatcaaagcatataccacaacagattttagaggattgaccttgttctatagctgt |
202 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||| ||| |||| |
|
|
| T |
25013130 |
ccggttgaaaacatattagagtttgtt---------aagcatataccacagaagatttttgaggattggccttgttcgatatctgt |
25013054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 24972020 - 24972193
Alignment:
| Q |
17 |
acattctggatccggacacttgattttaatcactttttcttttatttgaatcttcacatacttggatatgcacttagtacaaaagggatgattgcataaa |
116 |
Q |
| |
|
||||||||||||||||||||| | ||| | || |||||||||| |||||| ||| ||| ||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
24972020 |
acattctggatccggacacttcactttcaccattttttcttttctttgaactttcgcattcttggatatgcacttagtacaaaaggggtgattgcatgaa |
24972119 |
T |
|
| Q |
117 |
ccggttgaaaacatattagagtttgttacagaatcaaagcatataccacaacagattttagaggattgaccttg |
190 |
Q |
| |
|
|| |||| || || ||||||| | |||||||||||| |||||||| || || |||| ||||||||| |||| |
|
|
| T |
24972120 |
ccagttgcgaatattttagagtctattacagaatcaagacatataccgcataagctttttgaggattgagcttg |
24972193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 25027134 - 25027012
Alignment:
| Q |
71 |
cacatacttggatatgcacttagtacaaaagggatgattgcataaaccggttgaaaacatattagagtttgttacagaatcaaagcatataccacaac-- |
168 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||| ||| |||| ||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
25027134 |
cacatacatggatatgcaattagtacaaaagggatgattgcatgaacttgttgtgaacattttagagactgttacagaatcaaagcatataccacagctg |
25027035 |
T |
|
| Q |
169 |
-agattttagaggattgaccttg |
190 |
Q |
| |
|
|| |||| |||||||||||||| |
|
|
| T |
25027034 |
aagcttttcgaggattgaccttg |
25027012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 33532552 - 33532736
Alignment:
| Q |
17 |
acattctggatccggacacttgattttaatcactttttcttttatttgaatcttcacatacttggatatgcacttagtacaaaagggatgattgcataaa |
116 |
Q |
| |
|
|||||||||||| ||||| || | ||| | |||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
33532552 |
acattctggatcaggacaattcagtttcaccactttttctgttatttgattcttcacatacttgcatatgcatttagtacaaaagggatgattgcag--- |
33532648 |
T |
|
| Q |
117 |
ccggttgaaaacatattagagtttgttacagaatcaaagcatataccacaacagattttagaggattgaccttgttctatagctgtct |
204 |
Q |
| |
|
|| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
33532649 |
ccagttgaaaacatgttagagtctgttacagaatcaaagcatataccacagaagatttttgaggattgaccttgttctataactgtct |
33532736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 26104085 - 26103993
Alignment:
| Q |
71 |
cacatacttggatatgcacttagtacaaaagggatgattgcataaaccggttgaaaacatattagagtttgttacagaatcaaagcatatacc |
163 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||| ||| | | |||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
26104085 |
cacatacttggatatgcaattagtacaaaatggatgattgcatgaactagcagtgaacatattagtgttttttacagaatcaaagcatatacc |
26103993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 16868795 - 16868611
Alignment:
| Q |
17 |
acattctggatccggacacttgattttaatcactttttcttttatttgaatcttcacatacttggatatgcacttagtacaaaagggatgattgcataaa |
116 |
Q |
| |
|
|||||||||||| ||||| || | ||| | |||||||||| |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
16868795 |
acattctggatcaggacaattcagtttcaccactttttctgttatttgattcttcacatacttgcatatgcatttagtacaaaagggatgattgcag--- |
16868699 |
T |
|
| Q |
117 |
ccggttgaaaacatattagagtttgttacagaatcaaagcatataccacaacagattttagaggattgaccttgttctatagctgtct |
204 |
Q |
| |
|
|| ||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
16868698 |
ccagttgaaaacatgttagagtctgttacagaatcaaagcatataccacagaagatttttgaggattgaccttgttctataactgtct |
16868611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University