View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9015_low_63 (Length: 220)

Name: NF9015_low_63
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9015_low_63
NF9015_low_63
[»] chr6 (2 HSPs)
chr6 (1-196)||(4183691-4183886)
chr6 (1-196)||(4744530-4744725)
[»] chr1 (8 HSPs)
chr1 (16-172)||(51382140-51382296)
chr1 (9-196)||(51857778-51857965)
chr1 (14-130)||(51763628-51763744)
chr1 (9-172)||(51781992-51782155)
chr1 (21-152)||(51221896-51222027)
chr1 (9-172)||(51831605-51831768)
chr1 (9-136)||(51828985-51829113)
chr1 (42-122)||(25611721-25611801)
[»] scaffold0015 (1 HSPs)
scaffold0015 (75-163)||(41141-41229)
[»] chr3 (3 HSPs)
chr3 (51-122)||(955600-955668)
chr3 (77-121)||(1941330-1941374)
chr3 (81-118)||(803982-804019)
[»] chr7 (1 HSPs)
chr7 (43-136)||(1421900-1421993)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 4183691 - 4183886
Alignment:
Q  1 ctaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183691 ctaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgca 4183790  T
Q  101 aacgcaacggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgggagg 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4183791 aacgcaacggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttagtgggagg 4183886  T

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Target: chr6; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 4744530 - 4744725
Alignment:
Q  1 ctaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4744530 ctaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaatt-caggacttgca 4744628  T
Q  101 aacgcaacggagttgaagga-ggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgggagg 196  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4744629 aacgcaacggagttgaaggagggtgtttcacagggagacagcagaggatttctgccacaagatcgaatggaagtaacggaggagagttagtgggagg 4744725  T

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Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 51382140 - 51382296
Alignment:
Q  16 ggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttg 115  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||    
T  51382140 ggcggtcgtggttggaggttgacaaacgaagttgcttcttggcgaaattggaatcatgagagataagataattccatgacttgcagacgcaacggagttg 51382239  T
Q  116 aaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaag 172  Q
    ||||||||||||||| |||||   ||| |||||||||||||| |||||||| |||||    
T  51382240 aaggaggtgtttcacggggagcaggcacaggatttctgccaccagatcgaacggaag 51382296  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 51857965 - 51857778
Alignment:
Q  9 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 108  Q
    |||| |||||||||| |||||||||| ||||| |||||||| ||| | | ||||| ||||||||| ||||||||||||||||| |||||||| | |||||    
T  51857965 aggtggtggcggtcgaggttggaggttgacaagcgaaggtgcttcatagtgaattcggaatcatgagagataagagaattccatgacttgcagatgcaac 51857866  T
Q  109 ggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgggagg 196  Q
    ||||||||||||| | |||||| |||||   ||| || ||||||| ||| |||||||| | ||| || ||| |||| ||||| |||||    
T  51857865 ggagttgaaggagatttttcacggggagctggcacagaatttctgtcacgagatcgaacgaaagaaatggaagagaattggtaggagg 51857778  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 51763628 - 51763744
Alignment:
Q  14 gtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagt 113  Q
    ||||||||| |||||||| || |  || |||||||| ||||||| |||||  ||||||||  |||||||||||||||| |||||||| ||||||| ||||    
T  51763628 gtggcggtcatggttggaagttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagacgcaacagagt 51763727  T
Q  114 tgaaggaggtgtttcac 130  Q
    |||||||| ||||||||    
T  51763728 tgaaggagatgtttcac 51763744  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 51782155 - 51781992
Alignment:
Q  9 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 108  Q
    |||| |||||| |||||||| ||||| ||||| |||| ||| || || |||||||| |||||||||||||||||||||||||| ||||| || || |  |    
T  51782155 aggtggtggcgatcgtggttagaggttgacaagcgaaagtgttttttagcgaatttagaatcatgggagataagagaattccatgacttacagacacggc 51782056  T
Q  109 ggagttgaaggaggtgtttcacagggagacag-cataggatttctgccacaagatcgaatggaag 172  Q
    |||||| || ||| |||||||| ||||| ||| || ||||||||||| || |||||||| |||||    
T  51782055 ggagtttaatgagatgtttcacggggag-cagacacaggatttctgcaaccagatcgaacggaag 51781992  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 51221896 - 51222027
Alignment:
Q  21 tcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaagga 120  Q
    ||||||||| |||| ||||| ||||| || |||||||| || ||  ||||||| ||||||||||||||||| |||||||| | ||| |||||||||| ||    
T  51221896 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaatttaaatcatgagagataagagaattccatgacttgcagatgcagcggagttgaatga 51221995  T
Q  121 ggtgtttcacagggagacagcataggatttct 152  Q
    |||||||||| || || | ||| |||||||||    
T  51221996 ggtgtttcacgggcagccggcacaggatttct 51222027  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 172
Target Start/End: Complemental strand, 51831768 - 51831605
Alignment:
Q  9 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 108  Q
    |||| |||||||| | |||||||||| |||||  ||||||| ||| ||| ||| |||||||| |  ||||||||||| ||||| |||||||| || ||||    
T  51831768 aggtggtggcggtggaggttggaggttgacaactgaaggtgcttcctggtgaaattggaatcttcagagataagagagttccatgacttgcagacacaac 51831669  T
Q  109 ggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaag 172  Q
    |||||||||||||   |||||| ||||| | ||| |||||| || |||| ||||| || |||||    
T  51831668 ggagttgaaggagaaatttcactgggagccggcacaggattactaccacgagatcaaacggaag 51831605  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 51829113 - 51828985
Alignment:
Q  9 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggactt-gcaaacgcaa 107  Q
    |||| |||||||| ||||| | |||| || ||  ||||||| ||| |||| || |||||||| |  | ||||||||||||||| ||||| ||| || |||    
T  51829113 aggtggtggcggttgtggtcgtaggttgagaagtgaaggtgtttcctggcaaaattggaatcctcagggataagagaattccatgactttgcagacacaa 51829014  T
Q  108 cggagttgaaggaggtgtttcacagggag 136  Q
    |||||||||| |||||||||||| |||||    
T  51829013 cggagttgaatgaggtgtttcacggggag 51828985  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 25611721 - 25611801
Alignment:
Q  42 cgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggagg 122  Q
    |||||||| |||||| | || |||| |||||  || || ||||||||||| |||||||| ||||||| || ||||||||||    
T  25611721 cgaaggtgtttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggagg 25611801  T

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Target: scaffold0015 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 41141 - 41229
Alignment:
Q  75 gagataagagaattccaggacttgcaaacgcaacggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatc 163  Q
    ||||| ||||||||||| |||||||| |||||||||| ||| ||||||  |||||||||||| |  ||||||||||| |||||||||||    
T  41141 gagattagagaattccatgacttgcagacgcaacggaattgtaggaggaatttcacagggagtcgacataggatttcagccacaagatc 41229  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 955668 - 955600
Alignment:
Q  51 ttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggagg 122  Q
    ||||||||||| |||||||||   ||||||||||||||||| ||||| |||||||| || ||||||||||||    
T  955668 ttcttggcgaagttggaatca---gagataagagaattccaagacttacaaacgcatcgaagttgaaggagg 955600  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 1941330 - 1941374
Alignment:
Q  77 gataagagaattccaggacttgcaaacgcaacggagttgaaggag 121  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||    
T  1941330 gataagagaattccacgacttgcaaacgcaccggaattgaaggag 1941374  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 803982 - 804019
Alignment:
Q  81 agagaattccaggacttgcaaacgcaacggagttgaag 118  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  803982 agagaattccatgacttgcaaacgcatcggagttgaag 804019  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 1421900 - 1421993
Alignment:
Q  43 gaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggaggtgtttcacagggag 136  Q
    ||||||| || ||||||||||||| |||||  ||||| ||| ||||||| ||||| || |||||||||| ||| ||||||  |||||| |||||    
T  1421900 gaaggtgttttttggcgaatttgggatcatttgagattagaaaattccacgacttacagacgcaacggaattgtaggaggaatttcactgggag 1421993  T

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