View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9015_low_64 (Length: 217)
Name: NF9015_low_64
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9015_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 27531535 - 27531610
Alignment:
| Q |
16 |
agagactaaactaatgtttgaatttcccgccaaaaagtatcatannnnnnnaattgaaacatgaaaaagagaaatc |
91 |
Q |
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| T |
27531535 |
agaggctaaactaatgtttgaatttcccgccaaaaagtatcatatttttttaattgaaacatgaaaaagagaaatc |
27531610 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 27531735 - 27531779
Alignment:
| Q |
157 |
ccctacttcgaatatgattactttcaggggaggtaagggggtaag |
201 |
Q |
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| T |
27531735 |
ccctacttcgaatatgattacttttaggggaggtaagggggtaag |
27531779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 27531641 - 27531680
Alignment:
| Q |
116 |
agagcgcaaaaggtactcaaacccatacacaaacaaataa |
155 |
Q |
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| T |
27531641 |
agagcacaaaaggtactcaaacccatacacaaacaaataa |
27531680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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