View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9015_low_9 (Length: 461)

Name: NF9015_low_9
Description: NF9015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9015_low_9
NF9015_low_9
[»] chr7 (24 HSPs)
chr7 (188-447)||(4654409-4654668)
chr7 (1-168)||(4653652-4653819)
chr7 (188-410)||(4637767-4637990)
chr7 (188-410)||(4644605-4644828)
chr7 (2-162)||(4631060-4631220)
chr7 (188-338)||(4711116-4711266)
chr7 (3-168)||(4672837-4673002)
chr7 (4-162)||(4663126-4663284)
chr7 (4-162)||(4845814-4845975)
chr7 (9-168)||(4864062-4864221)
chr7 (216-362)||(4673647-4673793)
chr7 (11-168)||(4696986-4697143)
chr7 (10-162)||(4643848-4644000)
chr7 (198-338)||(4696213-4696353)
chr7 (2-168)||(4667071-4667240)
chr7 (2-162)||(4711874-4712037)
chr7 (216-306)||(4663637-4663727)
chr7 (216-338)||(4845044-4845166)
chr7 (2-162)||(4783637-4783797)
chr7 (2-162)||(4816066-4816226)
chr7 (193-277)||(4782925-4783009)
chr7 (193-277)||(4815354-4815438)
chr7 (2-142)||(4636990-4637130)
chr7 (273-362)||(4864926-4865015)
[»] chr4 (1 HSPs)
chr4 (2-162)||(18925544-18925704)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 188 - 447
Target Start/End: Original strand, 4654409 - 4654668
Alignment:
Q  188 atctgaggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagaga 287  Q
    |||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4654409 atctaaggtagtagtgtctgttagggagccacaatcgatagctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagaga 4654508  T
Q  288 gatagtatgctcatttttgtgtaaattgttttgtttatggagtttgccatatctgtgtgagaagagtgtgaagaaaatagattaatatgaatgatacgta 387  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||    
T  4654509 gatagtatgctcatttttgtgtaaatgtttttgtttatggagtttgccatatctgtgtgagaagagtgtgaagaaaatagatcaatttgaatggtacgta 4654608  T
Q  388 gaagttgctttatttattattatcttatacattgagtaggaagggaaatttccataaaac 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4654609 gaagttgctttatttattattatcttatacattgagtaggaagggaaatttccataaaac 4654668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 4653652 - 4653819
Alignment:
Q  1 tcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4653652 tcattccataacttctcgcagttaggtatacagcttctggtgcgatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttga 4653751  T
Q  101 tacacttagtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaacaaaccag 168  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  4653752 tacacttagtggatattgtttctctaagtaacgaggataatcgttatcccaattacgaaacaaaccag 4653819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 188 - 410
Target Start/End: Original strand, 4637767 - 4637990
Alignment:
Q  188 atctgaggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagaga 287  Q
    |||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| | ||||||||||||     
T  4637767 atctaaggcagtattgtcggttaaggagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactaaagggaaaagtagcaaaaagagg 4637866  T
Q  288 gatagtatgctcatttttgtgtaaattgttttgtttatggagtttgccatatctgtgtgagaagagtgtgaagaaaatagattaatatgaatgatacgta 387  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||||||||| |||||||||||||| |||||||| ||| |||||| |||||| ||||||    
T  4637867 gatagtatgctgatttttgtgtaaatgtttttgtttatggagtttgccatagctgtgtgagaagagagtgaagaagatacattaatttgaatggtacgta 4637966  T
Q  388 gaagttgc-tttatttattattat 410  Q
    |||||||| |||||||||||||||    
T  4637967 gaagttgcatttatttattattat 4637990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 188 - 410
Target Start/End: Original strand, 4644605 - 4644828
Alignment:
Q  188 atctgaggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagaga 287  Q
    |||| ||||||||||||  |||  |||||||||| | ||||||| |||||||   || |||||||||  ||| | ||||||||||| |||||||| ||||    
T  4644605 atctaaggcagtagtgttcgttgaggagccacaactaatggctatattgtaaattggattgtatgaggtagctagtagagggaacagtagcaaaatgaga 4644704  T
Q  288 gatagtatgctcatttttgtgtaaattgttttgtttatggagtttgccatatctgtgtgagaagagtgtgaagaaaatagattaatatgaatgatacgta 387  Q
    || |||||||| |||||||||||| || |||||||||||| ||||||||||  ||||||||||||| |||||||| ||| |||||| |||||| ||||||    
T  4644705 gaaagtatgctgatttttgtgtaattttttttgtttatggtgtttgccatagttgtgtgagaagagagtgaagaagatacattaatttgaatggtacgta 4644804  T
Q  388 gaagttgc-tttatttattattat 410  Q
    |||||||| |||||||||||||||    
T  4644805 gaagttgcatttatttattattat 4644828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 4631060 - 4631220
Alignment:
Q  2 cattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgat 101  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||| |||||||||  |||||| ||||||| | |||||| |||||||    
T  4631060 cattccataacttctcgcagttaagtaaacagcttctggtgcagtgtaatttgaaatggtattgtttaaatagtttagatgatgtccaaaataacttgat 4631159  T
Q  102 acacttagtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaaca 162  Q
    ||||| |||||||||| |||||| |||||||||||||||||  | |||||||| |||||||    
T  4631160 acactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaaca 4631220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 188 - 338
Target Start/End: Complemental strand, 4711266 - 4711116
Alignment:
Q  188 atctgaggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagaga 287  Q
    |||| |||||||||||| ||||  | |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||||    
T  4711266 atctaaggcagtagtgtttgttgagaagccacaattgatggctaaattgtaatcagggttgtatgagttagcaactagagggaacaagagcaaatagaga 4711167  T
Q  288 gatagtatgctcatttttgtgtaaattgttttgtttatggagtttgccata 338  Q
    ||||||| | | ||||| |||| || | ||| |||||||||||||||||||    
T  4711166 gatagtagggtaattttagtgtgaaatttttcgtttatggagtttgccata 4711116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 4672837 - 4673002
Alignment:
Q  3 attccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgata 102  Q
    |||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||  | ||||||||||||  | | | ||||||||||    
T  4672837 attccataacttcttgcagttacgtaaacagcttctggtgcagtgtaatttggaatggtattgtttaaaaagttgagatgatgcatatactcacttgata 4672936  T
Q  103 cacttagtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaacaaaccag 168  Q
    |||| ||||||||||||||||| ||||||| | |||||||  | |||||||||||||||| |||||    
T  4672937 cactaagtggatattgtttctccaagtaaccatgaaaatcattgtcccaattacgaaacataccag 4673002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 4663126 - 4663284
Alignment:
Q  4 ttccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatac 103  Q
    |||||||| |||| ||||||| |||||||| |||||||||| ||||||||||||| |||||||||  |||||| ||||||| | ||||||||||||||||    
T  4663126 ttccataatttcttgcagttaagtatacagtttctggtgcagtgtaatttggaatggtattgtttaaatagtttagatgatctccaaaatcacttgatac 4663225  T
Q  104 acttagtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaaca 162  Q
    |||| ||||||||| | |||| |||||||||||| ||||  | ||||||| ||||||||    
T  4663226 actttgtggatattctatctccaagtaacgaggagaatcattttcccaataacgaaaca 4663284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 4845975 - 4845814
Alignment:
Q  4 ttccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgat---ttacaaaatcacttga 100  Q
    ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||||  |||||| |||||||   || || ||  ||||||    
T  4845975 ttccataacttcttgcagttaagtatacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatgatcacttccataaaaacttga 4845876  T
Q  101 tacacttagtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaaca 162  Q
    |||||| |||||||||| |||||| |||||||||||||||||  | |||||||| |||||||    
T  4845875 tacactaagtggatattctttctccaagtaacgaggaaaatcattgtcccaattgcgaaaca 4845814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 4864062 - 4864221
Alignment:
Q  9 taacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacactta 108  Q
    |||||||| ||||||| ||| ||| ||||||||||| |||||||| |||| || ||||||| |||||| ||||||| |  ||||||||||||||  |||     
T  4864062 taacttcttgcagttaagtacacaacttctggtgcagtgtaattttgaatggtgttgttttcatagttaagatgatgtttaaaatcacttgatatgcttt 4864161  T
Q  109 gtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaacaaaccag 168  Q
    |||||||||||||||| |||||||||||||||||  | |||||||||||||||| |||||    
T  4864162 gtggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacataccag 4864221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 362
Target Start/End: Original strand, 4673647 - 4673793
Alignment:
Q  216 ccacaattgatggctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaattg 315  Q
    ||||||||||||||||||||||||   || |||||||||  ||||| |||||||||||| ||||||| ||| | ||||| | | |||||||||||| ||     
T  4673647 ccacaattgatggctaaattgtaaattggtttgtatgaggtagcaactagagggaacaagagcaaaatgagcggtagtagggtgatttttgtgtaatttt 4673746  T
Q  316 ttttgtttatggagtttgccatatctgtgtgagaagagtgtgaagaa 362  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  4673747 ttttgtttatggagtttgccatagctgtgtgagaagagggtgaagaa 4673793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 4697143 - 4696986
Alignment:
Q  11 acttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttagt 110  Q
    |||||| ||||||| ||| ||||||||||||||| |||||||| |||| || ||||||| |||||| ||||||| |  ||||||||||||||  ||| ||    
T  4697143 acttcttgcagttaagtacacagcttctggtgcagtgtaattttgaatggtgttgttttcatagttaagatgatgtttaaaatcacttgatatgctttgt 4697044  T
Q  111 ggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaacaaaccag 168  Q
    |||||||||||||| |||||||||||||||||  | ||||| |||||||||| |||||    
T  4697043 ggatattgtttctccaagtaacgaggaaaatcattgtcccagttacgaaacataccag 4696986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 4643848 - 4644000
Alignment:
Q  10 aacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgatacacttag 109  Q
    ||||||| |||||||  || ||||||||||||||| ||||||||||||| | ||| |||  |||||| ||||||| | || ||||| ||||||| |||||    
T  4643848 aacttcttgcagttaaataaacagcttctggtgcagtgtaatttggaatggcattttttaaatagtttagatgatgttcataatcatttgatacgcttag 4643947  T
Q  110 tggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaaca 162  Q
     |||||||||||||| |||||||||||| ||||  | ||||||||||||||||    
T  4643948 cggatattgtttctccaagtaacgaggataatcattgtcccaattacgaaaca 4644000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 198 - 338
Target Start/End: Complemental strand, 4696353 - 4696213
Alignment:
Q  198 gtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgc 297  Q
    |||||||||| |  ||||||||||||||||||||||||||||  ||||| |||||||  ||||| |||||||||||||||||||| ||||||||| | |     
T  4696353 gtagtgtctgatgaggagccacaattgatggctaaattgtaaatagggtcgtatgaggtagcaactagagggaacaatagcaaaatgagagatagcagga 4696254  T
Q  298 tcatttttgtgtaaattgttttgtttatggagtttgccata 338  Q
    | ||||| |||| || | |||||||| ||||||||||||||    
T  4696253 tgattttagtgtgaaattttttgtttctggagtttgccata 4696213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 4667071 - 4667240
Alignment:
Q  2 cattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatt---tacaaaatcactt 98  Q
    ||||||||||||||| ||||||| ||| ||| ||||||||||| ||||||||||||| ||||| | |  ||||||  ||||||    | |||||| ||||    
T  4667071 cattccataacttcttgcagttaagtacacaacttctggtgcagtgtaatttggaatagtattttgtaaatagtttggatgatcaggtccaaaataactt 4667170  T
Q  99 gatacacttagtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaacaaaccag 168  Q
    ||||  ||| |||||||||||||||| |||||||||||||||||  | |||||||||||||||| |||||    
T  4667171 gatatgctttgtggatattgtttctccaagtaacgaggaaaatcattgtcccaattacgaaacataccag 4667240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 4712037 - 4711874
Alignment:
Q  2 cattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgat---ttacaaaatcactt 98  Q
    ||||||||||||||| ||||| | ||||||||||||||||||| ||||||| ||||| |||||||||  ||||||  ||||||   || || || || ||    
T  4712037 cattccataacttcttgcagtaaagtatacagcttctggtgcagtgtaattgggaatggtattgtttaaatagtttggatgatcacttccataaacagtt 4711938  T
Q  99 gatacacttagtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaaca 162  Q
    ||||||||| ||||||||| ||| || | |||| |||||||||| || ||||||||||||||||    
T  4711937 gatacactttgtggatattctttttccaggtaaagaggaaaatcactgtcccaattacgaaaca 4711874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 216 - 306
Target Start/End: Original strand, 4663637 - 4663727
Alignment:
Q  216 ccacaattgatggctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttg 306  Q
    |||||| |||||||||||||||||   ||||||||||||  |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  4663637 ccacaactgatggctaaattgtaaattgggttgtatgaggtagcaattagagggaacaatagcaaaatgagagatagtatgctgatttttg 4663727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 216 - 338
Target Start/End: Complemental strand, 4845166 - 4845044
Alignment:
Q  216 ccacaattgatggctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatagcaaaaagagagatagtatgctcatttttgtgtaaattg 315  Q
    |||||||||||||||||||||||||||||||||||||||| |  || |||||||||||| | |||| ||| |||||||| | | ||||| |||| || |     
T  4845166 ccacaattgatggctaaattgtaatcagggttgtatgagttaataactagagggaacaaaaccaaatagatagatagtagggtgattttagtgtgaaatt 4845067  T
Q  316 ttttgtttatggagtttgccata 338  Q
    |||||||||||||||||| ||||    
T  4845066 ttttgtttatggagtttggcata 4845044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 4783797 - 4783637
Alignment:
Q  2 cattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgat 101  Q
    ||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||   ||||||||||||  | || | || |  ||| |||||||||    
T  4783797 cattccataacttcttgcagttaagtaaacaccttctggtgcaatgtaatttggaatgacattgtttttatatgttaggttatgtgtaaagtcacttgat 4783698  T
Q  102 acacttagtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaaca 162  Q
    |||||   ||| || | |||||| |||||||||||| ||||  | ||||||||||||||||    
T  4783697 acactagatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaaca 4783637  T

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Target: chr7; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 4816226 - 4816066
Alignment:
Q  2 cattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgat 101  Q
    ||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||   ||||||||||||  | || | || |  ||| |||||||||    
T  4816226 cattccataacttcttgcagttaagtaaacaccttctggtgcaatgtaatttggaatgacattgtttttatatgttaggttatgtgtaaagtcacttgat 4816127  T
Q  102 acacttagtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaaca 162  Q
    |||||   ||| || | |||||| |||||||||||| ||||  | ||||||||||||||||    
T  4816126 acactagatgggtactctttctccaagtaacgaggagaatcattgtcccaattacgaaaca 4816066  T

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Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 4783009 - 4782925
Alignment:
Q  193 aggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatag 277  Q
    |||||||||||| ||||  |||||||||| ||||||||||| |||||||||||||||||||   |||||||||||| || |||||    
T  4783009 aggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaaatagcaattagaggaaataatag 4782925  T

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Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 4815438 - 4815354
Alignment:
Q  193 aggcagtagtgtctgttagggagccacaattgatggctaaattgtaatcagggttgtatgagtaagcaattagagggaacaatag 277  Q
    |||||||||||| ||||  |||||||||| ||||||||||| |||||||||||||||||||   |||||||||||| || |||||    
T  4815438 aggcagtagtgtttgttgaggagccacaactgatggctaaactgtaatcagggttgtatgaactagcaattagaggaaataatag 4815354  T

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Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 4636990 - 4637130
Alignment:
Q  2 cattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgat 101  Q
    |||||| |||||||| ||||||| ||| ||| |||||||||||||||||||||||||   ||||||||||||  | || | || |  ||| |||||||||    
T  4636990 cattccgtaacttcttgcagttaagtacacaacttctggtgcaatgtaatttggaatgacattgtttttatatgttaggttatgtgtaaagtcacttgat 4637089  T
Q  102 acacttagtggatattgtttctctaagtaacgaggaaaatc 142  Q
    |||||   ||| || | |||||| |||||| ||||||||||    
T  4637090 acactagatgggtactctttctccaagtaaagaggaaaatc 4637130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 362
Target Start/End: Original strand, 4864926 - 4865015
Alignment:
Q  273 aatagcaaaaagagagatagtatgctcatttttgtgtaaattgttttgtttatggagtttgccatatctgtgtgagaagagtgtgaagaa 362  Q
    ||||| |||| ||||||||||| | | ||||| ||||||| | | |||||||| ||||||||||||  ||||||||||||| ||||||||    
T  4864926 aataggaaaaggagagatagtagggtgattttagtgtaaagtttcttgtttatcgagtttgccatagttgtgtgagaagagggtgaagaa 4865015  T

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Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 18925704 - 18925544
Alignment:
Q  2 cattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgat 101  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||  |||| |||||||| ||||||||| |||||||||||| || |  ||||||| |||||    
T  18925704 cattccataacttcttgcagttaagtatacaacttctggtgccgtgtagtttggaatggtattgtttatatagttgagattatgtgtaaaatcatttgat 18925605  T
Q  102 acacttagtggatattgtttctctaagtaacgaggaaaatcgctatcccaattacgaaaca 162  Q
    ||||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||||||    
T  18925604 acacttagtggatattgtttctccaagtaacgaggaaaatcgttgtcccaataacgaaaca 18925544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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