View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9016_low_10 (Length: 511)
Name: NF9016_low_10
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 41 - 492
Target Start/End: Original strand, 24563113 - 24563568
Alignment:
| Q |
41 |
tactttccactattcctcaaaccactcacacacgaattctacaaaatacagaacaaaatctgaga-acaagaaatgcaagaaatttattccatggcagat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24563113 |
tactttccactattcctcaaaccactcacacacgaattctaaaaaatacagaacaaaatctgagacacaagaaatgcaagaaatttattccatggcagat |
24563212 |
T |
|
| Q |
140 |
ggaaatcttttctgcattgaggaagatagaaggatgaaaacctaccataaccagaataatca---tcatcatcatcttgctttgaaatgtcctcgttgta |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24563213 |
ggaaatcttttctgcattgaggaagatagaaggatgaaaacctaccataaccagaataatcatcatcatcatcatcttgctttgaaatgtcctcgttgta |
24563312 |
T |
|
| Q |
237 |
attccttcaacacgaaattctgctactacaacaactacaacctctctcagcctcgtcatttctgtaaaaactgccgtcgctactggaccaaaggtggcat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24563313 |
attccttcaacacgaaattctgctactacaacaactacaacctctctcagcctcgtcatttctgtaaaaactgccgtcgctactggaccaaaggtggcat |
24563412 |
T |
|
| Q |
337 |
ccttcgtaacgtccccgtcggcggtggttcacgcaaatcaaagaaatcaaaaacggcatcatcatcttccatcacctcttcagcagcaaccacgccaaca |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24563413 |
ccttcgtaacgtccccgtcggcggtggttcccagaaatcaaagaaatcaaagacggcatcatcatcttccatcccctcttcagcagcaaccacgccaaca |
24563512 |
T |
|
| Q |
437 |
ccgcttcaaccggaagctgataagtcagattctcactccaacagtgatggctcaac |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24563513 |
ccgcttcaaccggaagctgataagtcagattctcactccaacagtgatggctcaac |
24563568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 3908487 - 3908555
Alignment:
| Q |
224 |
tgtcctcgttgtaattccttcaacacgaaattctgctactacaacaactacaacctctctcagcctcgt |
292 |
Q |
| |
|
|||||| | ||| |||| |||||||| || |||||||| ||||||||||| | ||| |||||||||||| |
|
|
| T |
3908487 |
tgtcctaggtgtgattcattcaacaccaagttctgctattacaacaactatagcctatctcagcctcgt |
3908555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 219 - 365
Target Start/End: Complemental strand, 45763783 - 45763637
Alignment:
| Q |
219 |
tgaaatgtcctcgttgtaattccttcaacacgaaattctgctactacaacaactacaacctctctcagcctcgtcatttctgtaaaaactgccgtcgcta |
318 |
Q |
| |
|
||||||||||||| ||| | ||| ||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||||| ||||||||||| || || |
|
|
| T |
45763783 |
tgaaatgtcctcgctgtgactccatcaacaccaaattctgttactacaataactacaacctctcccagcctcgtcacttctgcaaaaactgccgacgtta |
45763684 |
T |
|
| Q |
319 |
ctggaccaaaggtggcatccttcgtaacgtccccgtcggcggtggtt |
365 |
Q |
| |
|
|||||| ||||| || | || ||||||||||||||||| ||||||| |
|
|
| T |
45763683 |
ctggactaaaggcggtgttctccgtaacgtccccgtcggtggtggtt |
45763637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 53435451 - 53435369
Alignment:
| Q |
183 |
accataaccagaataatcatcatcatcatcttgctttgaaatgtcctcgttgtaattccttcaacacgaaattctgctactacaac |
268 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||| || ||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
53435451 |
accataaccag---aatcatcatcatcttcttgctttgaaatgtcttcactgtgattcctacaacacaaaattctgctactacaac |
53435369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 23663561 - 23663637
Alignment:
| Q |
224 |
tgtcctcgttgtaattccttcaacacgaaattctgctactacaacaactacaacctctctcagcctcgtcatttctg |
300 |
Q |
| |
|
||||||||||| |||| |||||| ||||| ||||||| ||||||||||| |||| |||| |||||||| ||||| |
|
|
| T |
23663561 |
tgtcctcgttgcgattcaaccaacactaaattttgctacttcaacaactacagcctcactcaacctcgtcacttctg |
23663637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 5211297 - 5211232
Alignment:
| Q |
244 |
caacacgaaattctgctactacaacaactacaacctctctcagcctcgtcatttctgtaaaaactg |
309 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||| || || || ||||| || |||||||| |
|
|
| T |
5211297 |
caacacaaaattctgctactacaacaactacaatctctcacaaccacgccatttttgcaaaaactg |
5211232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 324
Target Start/End: Complemental strand, 33740251 - 33740150
Alignment:
| Q |
223 |
atgtcctcgttgtaattccttcaacacgaaattctgctactacaacaactacaacctctctcagcctcgtcatttctgtaaaaactgccgtcgctactgg |
322 |
Q |
| |
|
|||||| |||||| |||| |||||| || || || |||||||||||||||||| ||||||||| ||||||||||| ||| ||||| ||||||||| |
|
|
| T |
33740251 |
atgtccacgttgtgattcaaccaacactaagttttgttactacaacaactacaactactctcagccacgtcatttctgcaaagcttgccgccgctactgg |
33740152 |
T |
|
| Q |
323 |
ac |
324 |
Q |
| |
|
|| |
|
|
| T |
33740151 |
ac |
33740150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 33823833 - 33823918
Alignment:
| Q |
245 |
aacacgaaattctgctactacaacaactacaacctctctcagcctcgtcatttctgtaaaaactgccgtcgctactggaccaaagg |
330 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||| |||||||||| |||||||| || | |||||||| || ||||| ||||| |
|
|
| T |
33823833 |
aacacaaaattttgttactacaacaactataacctcactcagcctcgccatttctgcaagacatgccgtcgttattggacaaaagg |
33823918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University