View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_12 (Length: 499)
Name: NF9016_low_12
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 49814328 - 49813847
Alignment:
| Q |
1 |
tctacttactatttcatcttctccttcttttcttttttcctatttatgttattacattattcattccactaccaacctaaaacatagtgaacaatttaat |
100 |
Q |
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| T |
49814328 |
tctacgtactatttcatcttctccttcttttcttttttcctatttatgttattacattattcattccactaccaacctaaaacatagtgaacaatttaat |
49814229 |
T |
|
| Q |
101 |
agtgacaccacaacagaaagaaaaatcagagaatgaaatatggttggtcttggtgttgtgcttgaagaacaacaaccacataagaaaaagtgtaatatca |
200 |
Q |
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| T |
49814228 |
agtgacaccacaacagaaagaaaaatcagagaatgaaatatggttggtcttggtgttgtgcttgaagaacaacaaccacataagaaaaagtgtaatatca |
49814129 |
T |
|
| Q |
201 |
acatcaacaacaacaataacacttatcaagttattaacaaaactaccatgatgcttagcagcacaatcaacaacaatgcttcctctccactttcctacca |
300 |
Q |
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| T |
49814128 |
acatcaacaacaacaataacacttatcaagttattaacaaaactaccatgatgcttagcagcacaatcaacaacaatgcttcctatccactttcctacca |
49814029 |
T |
|
| Q |
301 |
ctctccttttaaggtttcaacttttcttgaccaatgctttctatgcagcaagaagctcttacctgggaaagatatctacatgtacaagtgagttctcgga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49814028 |
ttctccttttaaggtttcaacttttcttgaccaatgctttctatgcagcaagaagctcttacctgggaaagatatctacatgtacaagtgagttctcgga |
49813929 |
T |
|
| Q |
401 |
accaaaataagtgtagcatgcattttcatcttatcacattttcacttttaattttatctcc--tagtatatatagatcttac |
480 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49813928 |
accaaaataagtgtagcatgcattttcatcttatcacattttcacttttaattttatctcctatagtatatatagatcttac |
49813847 |
T |
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