View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_15 (Length: 492)
Name: NF9016_low_15
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_15 |
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| [»] chr7 (9 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Complemental strand, 39179945 - 39179471
Alignment:
| Q |
18 |
gactagaaagggattgaagcatatatataaatatactcagtgaaaggtctgaaagcaaatttaactaagagtattgttttttcctttgtaagcacaagac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39179945 |
gactagaaagggattgaagcatatatataaatatactcagtgaaaggtctgaaagcaaatttaactcagagtattgttttttcctttgtaagcacaagac |
39179846 |
T |
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| Q |
118 |
tttttctgctatgctaatctcaagtcaacttcataagataagatctaataataacttggtgggtaagttaaatgtaaaacaccaactgaaacaaaaaagc |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179845 |
tttttctgctatgctaatctcaagtcagcttcataagataagatctaataataacttggtgggtaagttaaatgtaaaacaccaactgaaacaaaaaagc |
39179746 |
T |
|
| Q |
218 |
cggccgattcctttttgttttcgacatatttttgtttgttagctaaatgtaaaatggtcagtttaaaacataaggtagtgaaaactaagcttctaaaatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179745 |
cggccgattcctttttgttttcgacatatttttgtttgttagctaaatgtaaaatggtcagtttaaaacataaggtagtgaaaactaagcttctaaaatc |
39179646 |
T |
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| Q |
318 |
agtttccttgtccttaaatacatcaaaagctcgtgagaaaaactaataaccttgcttgatccccaaacaagtgaccaaatagtttttcttgtccagcatc |
417 |
Q |
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| T |
39179645 |
agtttccttgtccttaaatacatcaaaagctcgtgagaaaaactaataaccttgcttgatccccaaacaagtgaccaaatagtttttcttgtccagcatc |
39179546 |
T |
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| Q |
418 |
atgatggaaatggttgaagaaaaagggtcagcaaacgggaaagaagattacactcaagatggaacagtagaccta |
492 |
Q |
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| T |
39179545 |
atgatggaaatggttgaagaaaaaggctcagcaaacgggaaagaagattacactcaggatggaacagtagaccta |
39179471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 39221397 - 39221217
Alignment:
| Q |
18 |
gactagaaagggattgaagcatatatataaatatactcagtgaaaggtctgaaagcaaatttaactaagagtattgttttttcctttgtaagcacaagac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||||||||| |
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| T |
39221397 |
gactagaaagggattgaagcatatatataaatatactcagtgaaaggtctgaaagcaaatttaaccaacaaaattgttttttccttcataagcacaagac |
39221298 |
T |
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| Q |
118 |
tttttctgctatgctaatctcaagtcaacttcataagataagatctaataataacttggtgggtaagttaaatgtaaaacaccaac |
203 |
Q |
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| T |
39221297 |
tttttctgctatgctaatctcaagtcagcttcata-----agatctaataataacttggtggataagttaaatgtaaaacaccaac |
39221217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 290 - 460
Target Start/End: Complemental strand, 39192272 - 39192098
Alignment:
| Q |
290 |
aggtagtgaaaactaagcttctaaaatcagtttccttgtcctt----aaatacatcaaaagctcgtgagaaaaactaataaccttgcttgatccccaaac |
385 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||||||||||||||| |||||| |
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| T |
39192272 |
aggtagtgataactaagcttctaaaatcagtttccttttccttgattaaatacatcaaaagctcatgagaaaacctagtaaccttgcttgatcgccaaac |
39192173 |
T |
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| Q |
386 |
aagtgaccaaatagtttttcttgtccagcatcatgatggaaatggttgaagaaaaagggtcagcaaacgggaaag |
460 |
Q |
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| T |
39192172 |
aagtgaccaagtagtttttcttgtccagcatcatgatggcaatggtagaagaaaaaggcccagcagaggggaaag |
39192098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 331 - 460
Target Start/End: Complemental strand, 39221131 - 39221002
Alignment:
| Q |
331 |
ttaaatacatcaaaagctcgtgagaaaaactaataaccttgcttgatccccaaacaagtgaccaaatagtttttcttgtccagcatcatgatggaaatgg |
430 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
39221131 |
ttaaatacatcaaaagctcatgagaaaaactagtaaccttgcttgatccccacacaagtgaccaagtagtttttcttgtccagcatcatgatggcaatgg |
39221032 |
T |
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| Q |
431 |
ttgaagaaaaagggtcagcaaacgggaaag |
460 |
Q |
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| T |
39221031 |
tagaagaaaaaggctcagcaaaagggaaag |
39221002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 39192513 - 39192404
Alignment:
| Q |
89 |
tattgttttttcctttgtaagcacaagactttttctgctatgctaatctcaagtcaacttcataagataagatctaataataacttggtgggtaagttaa |
188 |
Q |
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|||||||||||| |||||||||| | ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || ||||||||| |
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| T |
39192513 |
tattgttttttcttttgtaagcatataactttttctgctatgctaatctcaagtttgcttcacaagat-----ctaataataacttgatgagtaagttaa |
39192419 |
T |
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| Q |
189 |
atgtaaaacaccaac |
203 |
Q |
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| T |
39192418 |
atgtaaaacaccaac |
39192404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 492
Target Start/End: Complemental strand, 39218359 - 39218288
Alignment:
| Q |
421 |
atggaaatggttgaagaaaaagggtcagcaaacgggaaagaagattacactcaagatggaacagtagaccta |
492 |
Q |
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|||||| |||||||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
39218359 |
atggaagtggttgaagaaaaaggccctgcaaatgggaaagaagattacactcaagatggtacagtagaccta |
39218288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 421 - 492
Target Start/End: Complemental strand, 39225457 - 39225386
Alignment:
| Q |
421 |
atggaaatggttgaagaaaaagggtcagcaaacgggaaagaagattacactcaagatggaacagtagaccta |
492 |
Q |
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|||||| |||||||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
39225457 |
atggaagtggttgaagaaaaaggccctgcaaatgggaaagaagattacactcaagatggtacagtagaccta |
39225386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 492
Target Start/End: Complemental strand, 39196779 - 39196716
Alignment:
| Q |
429 |
ggttgaagaaaaagggtcagcaaacgggaaagaagattacactcaagatggaacagtagaccta |
492 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
39196779 |
ggttgaagaaaaaggccatgcaagtgggaaagaagattacactcaagatggtacagtagaccta |
39196716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 458 - 488
Target Start/End: Complemental strand, 39241071 - 39241041
Alignment:
| Q |
458 |
aagaagattacactcaagatggaacagtaga |
488 |
Q |
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| T |
39241071 |
aagaagattacactcaagatggaacagtaga |
39241041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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