View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9016_low_16 (Length: 488)
Name: NF9016_low_16
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 43814649 - 43815099
Alignment:
| Q |
18 |
ccttcaagatacccaattgaatgctgtgttgtagtgtgtagaacaatataagaagaacccatatgttatttaattttgaaaatagcataagtttaatgtt |
117 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43814649 |
ccttcaagatacccaactgaatgctgtgt---agtgtgtagaacaatataagaagaacccatatgttatttaattttgaaaatagcataagtttaatgtt |
43814745 |
T |
|
| Q |
118 |
ggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagatataaataaatgaattcaaaagatagactcttgcttatatgtgcatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43814746 |
ggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagatataaataaatgaattcaaaagatagactcttgcttatatgtgcatg |
43814845 |
T |
|
| Q |
218 |
atgaaacaataatttaaataggggccatgaaactcattgatcactttaaatgaaaaaaggataatgatctcacaaaattatcactttaaagaaataagtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43814846 |
atgaaacaataatttaaataggggccatgaaactcattgatcactttaaatgaaaaaaggataatgatctcacaaaattatcactttaaagaaataagtt |
43814945 |
T |
|
| Q |
318 |
tgtctaatatgaacccctgatattgagccaaactgaattcttgataaacgaaaaaaccgagtttctacaagtacatacttcatggccattgcttgcatcg |
417 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43814946 |
tgtctaatatgaa-ccctaatattgagccaaactgaattcttgataaacgaaaaaatcgagtttctacaagtacatacttcatggccattgcttgcatcg |
43815044 |
T |
|
| Q |
418 |
atgaattttcttccaaatctgtttaaagagccagctcttaatatgtcttgttctg |
472 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43815045 |
gtgaattttctttcaaatctgtttaaagagccagctcttaatatgtcttgttctg |
43815099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 29234488 - 29234416
Alignment:
| Q |
111 |
taatgttggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagatataaataaatgaa |
184 |
Q |
| |
|
|||| |||||||||| |||||||| ||| | |||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
29234488 |
taatattggtttgtggttaagtttcttgttttagaagataaaaat-agtcagagcaaagatttaaataaatgaa |
29234416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 29341703 - 29341639
Alignment:
| Q |
116 |
ttggtttgtgtttaagttttttgctatagaagataaaaataagttggagcaaagatataaataaa |
180 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||| |||| || ||||||| |||||||||||||||| |
|
|
| T |
29341703 |
ttggttggtgtttaactttcttgctatagaaaataagaaacagttggatcaaagatataaataaa |
29341639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University