View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_17 (Length: 469)
Name: NF9016_low_17
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 250 - 442
Target Start/End: Complemental strand, 1202346 - 1202154
Alignment:
| Q |
250 |
tcatcgagcttgttcatctgtgacaacaatcgcagaaccatgacgctatataaattatatatgtattcattccagcacaagaaattgcgacccctaacac |
349 |
Q |
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| T |
1202346 |
tcatcgagcttgttcatctgtgacaacaatcgcagaaccatgacgctatataaattatatatgtattcattccagcacaagaaattgcgacccctaacac |
1202247 |
T |
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| Q |
350 |
ccaaccagcttcatgccatctgcagatagccaccatggaaccaaggcaatattgcatacccaccaagacacaccagcacactatatttctcaa |
442 |
Q |
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| T |
1202246 |
ccaaccagcttcatgccatctgcagatagccaccatggaaccaaggcaatattgcatacccaccaggacacaccagcacactatatttctcaa |
1202154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 1202493 - 1202443
Alignment:
| Q |
18 |
acacacatacttactagattgagagagtttcattttgaacctgaacctgaa |
68 |
Q |
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| T |
1202493 |
acacacatacttactagattgagagagtttcattttgaatctgaacctgaa |
1202443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 359 - 438
Target Start/End: Complemental strand, 22776534 - 22776455
Alignment:
| Q |
359 |
ttcatgccatctgcagatagccaccatggaaccaaggcaatattgcatacccaccaagacacaccagcacactatatttc |
438 |
Q |
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| T |
22776534 |
ttcatgccatctgcagattggcaccatggaaccaaggcaatattgcatacccaccaagacacaccagcacactatctttc |
22776455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 359 - 438
Target Start/End: Complemental strand, 34939939 - 34939860
Alignment:
| Q |
359 |
ttcatgccatctgcagatagccaccatggaaccaaggcaatattgcatacccaccaagacacaccagcacactatatttc |
438 |
Q |
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| T |
34939939 |
ttcatgccatctgcatataggcaccatggaaccaaggcaatattgcatacccaccatgacacaccagcgcactatctttc |
34939860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 438
Target Start/End: Original strand, 46637983 - 46638049
Alignment:
| Q |
372 |
cagatagccaccatggaaccaaggcaatattgcatacccaccaagacacaccagcacactatatttc |
438 |
Q |
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| T |
46637983 |
cagataggcaccatggaaccaaggcaatattgcatacccaccatgagacaccagcgcactatctttc |
46638049 |
T |
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