View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_19 (Length: 455)
Name: NF9016_low_19
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 209 - 441
Target Start/End: Complemental strand, 33555696 - 33555464
Alignment:
| Q |
209 |
ttctaatttcgtttgatttggtaaaatcttgattaagttaagcatttcttttacattgtttagaacactgagtttgatttatgagatgttattgaacagc |
308 |
Q |
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| T |
33555696 |
ttctaatttcgtttgatttggtaaaatcttgattaagttaagcatttcttatacattgtttagaacactgagtttgatttatgagatgttattgaacagc |
33555597 |
T |
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| Q |
309 |
aacctgccattaatgttctgagagagatcaatacatttctcacacgacaccgaactgagatcgtcaccgttttcatcaaggatcgtgtaacatcaccaaa |
408 |
Q |
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| T |
33555596 |
aacctgctattaatgttctgagagagatcaatacatttctcacacgacaccgaactgagatagtcaccgttttcatcaaggatcgtgtaacatcaccaaa |
33555497 |
T |
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| Q |
409 |
tggtgtgaacaaggtgtttaataaagctggttt |
441 |
Q |
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| T |
33555496 |
tggtgtgaacaaggtgtttaataaagctggttt |
33555464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 42 - 178
Target Start/End: Complemental strand, 33555837 - 33555701
Alignment:
| Q |
42 |
atacttttaatgagccattttctgctgcagaatggtgtgagaggaataatgttagatatgcatgattactatggtgacatttggttgtgtcgcggaccgt |
141 |
Q |
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| T |
33555837 |
atacttttaatgagccattttctgctgcagaatggtgtgagaggaataatgttagatatgcatgattactatggtgacatttggttgtgtcgcggaccgt |
33555738 |
T |
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| Q |
142 |
gcacaatatttaccgcctttgtaagagattctttaat |
178 |
Q |
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| T |
33555737 |
gcacaatatttaccgcctttgtaagagattctttaat |
33555701 |
T |
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