View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9016_low_2 (Length: 837)

Name: NF9016_low_2
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9016_low_2
NF9016_low_2
[»] chr5 (17 HSPs)
chr5 (10-608)||(43481820-43482418)
chr5 (664-816)||(43482474-43482626)
chr5 (665-730)||(34381124-34381187)
chr5 (679-730)||(2117536-2117587)
chr5 (664-730)||(11306807-11306871)
chr5 (665-730)||(39595386-39595449)
chr5 (664-730)||(5130273-5130338)
chr5 (665-730)||(125204-125267)
chr5 (665-729)||(6865684-6865746)
chr5 (693-730)||(42532255-42532292)
chr5 (664-730)||(10232610-10232675)
chr5 (664-730)||(12661842-12661907)
chr5 (664-730)||(21749469-21749534)
chr5 (664-730)||(31284290-31284354)
chr5 (665-730)||(20719911-20719974)
chr5 (665-730)||(33567135-33567198)
chr5 (665-730)||(34767313-34767376)
[»] chr6 (5 HSPs)
chr6 (679-730)||(32853040-32853091)
chr6 (664-730)||(32253891-32253956)
chr6 (665-730)||(1897798-1897861)
chr6 (677-730)||(2582784-2582837)
chr6 (677-730)||(21857465-21857518)
[»] chr4 (23 HSPs)
chr4 (664-730)||(42915115-42915179)
chr4 (677-730)||(30778160-30778213)
chr4 (677-730)||(51389438-51389491)
chr4 (664-730)||(48372121-48372186)
chr4 (664-730)||(28480434-28480498)
chr4 (664-730)||(28481308-28481372)
chr4 (664-730)||(28482183-28482247)
chr4 (665-730)||(31275258-31275321)
chr4 (677-730)||(36408100-36408153)
chr4 (677-730)||(36413223-36413276)
chr4 (665-716)||(9162178-9162227)
chr4 (691-730)||(46212977-46213016)
chr4 (666-730)||(1580178-1580241)
chr4 (665-730)||(4896396-4896459)
chr4 (665-730)||(5234367-5234430)
chr4 (665-730)||(23690343-23690406)
chr4 (680-730)||(31658044-31658094)
chr4 (668-730)||(44166023-44166084)
chr4 (665-730)||(47471912-47471975)
chr4 (665-730)||(55927096-55927159)
chr4 (664-730)||(22257092-22257156)
chr4 (667-730)||(41952942-41953004)
chr4 (666-730)||(47134734-47134798)
[»] chr2 (12 HSPs)
chr2 (664-730)||(11164272-11164336)
chr2 (664-730)||(12600159-12600223)
chr2 (664-730)||(36133085-36133149)
chr2 (665-730)||(3091853-3091916)
chr2 (664-730)||(12962497-12962561)
chr2 (664-730)||(13711172-13711236)
chr2 (665-728)||(7086022-7086083)
chr2 (667-730)||(14714100-14714161)
chr2 (665-728)||(34249692-34249754)
chr2 (679-722)||(39285977-39286020)
chr2 (665-730)||(34442225-34442288)
chr2 (665-730)||(36376747-36376810)
[»] chr1 (11 HSPs)
chr1 (664-730)||(2362480-2362544)
chr1 (664-727)||(36418190-36418251)
chr1 (664-730)||(37843331-37843392)
chr1 (664-730)||(31480030-31480095)
chr1 (664-730)||(49453591-49453652)
chr1 (679-730)||(51571550-51571601)
chr1 (665-730)||(22389422-22389484)
chr1 (665-730)||(40610341-40610404)
chr1 (680-730)||(45740440-45740490)
chr1 (664-716)||(37690526-37690576)
chr1 (143-196)||(49813946-49813999)
[»] chr8 (18 HSPs)
chr8 (665-730)||(28927793-28927856)
chr8 (665-730)||(5502472-5502537)
chr8 (664-727)||(16011816-16011877)
chr8 (664-730)||(7678843-7678907)
chr8 (665-730)||(23258144-23258207)
chr8 (664-730)||(21273606-21273670)
chr8 (667-730)||(1179490-1179551)
chr8 (694-730)||(9046967-9047003)
chr8 (664-730)||(37101581-37101646)
chr8 (691-730)||(27673001-27673040)
chr8 (664-730)||(44672129-44672193)
chr8 (665-730)||(37524324-37524387)
chr8 (680-730)||(38128422-38128472)
chr8 (680-730)||(42941583-42941633)
chr8 (664-730)||(44103876-44103941)
chr8 (679-728)||(295670-295719)
chr8 (665-730)||(18538489-18538553)
chr8 (677-730)||(40413259-40413312)
[»] chr3 (12 HSPs)
chr3 (665-730)||(29706015-29706078)
chr3 (664-730)||(51650465-51650532)
chr3 (665-729)||(11173562-11173624)
chr3 (665-728)||(33007472-33007534)
chr3 (664-730)||(32457649-32457715)
chr3 (665-730)||(46473240-46473303)
chr3 (664-730)||(32687855-32687920)
chr3 (664-730)||(36318176-36318242)
chr3 (668-730)||(49130969-49131029)
chr3 (665-730)||(7231902-7231965)
chr3 (666-730)||(44365187-44365250)
chr3 (693-730)||(28539767-28539804)
[»] scaffold0018 (1 HSPs)
scaffold0018 (665-730)||(36111-36177)
[»] scaffold0036 (1 HSPs)
scaffold0036 (664-730)||(18115-18178)
[»] chr7 (15 HSPs)
chr7 (664-730)||(6353839-6353904)
chr7 (665-730)||(12141996-12142059)
chr7 (665-730)||(44894370-44894433)
chr7 (677-730)||(37351886-37351939)
chr7 (679-730)||(21839029-21839080)
chr7 (666-730)||(22330527-22330589)
chr7 (664-730)||(28596988-28597055)
chr7 (680-730)||(10591277-10591327)
chr7 (677-730)||(40717134-40717188)
chr7 (680-730)||(41966453-41966503)
chr7 (665-730)||(46651784-46651847)
chr7 (664-730)||(2414174-2414236)
chr7 (677-730)||(30180629-30180682)
chr7 (681-730)||(43445533-43445582)
chr7 (677-730)||(48866826-48866879)
[»] scaffold0115 (1 HSPs)
scaffold0115 (664-730)||(15085-15148)
[»] scaffold0056 (1 HSPs)
scaffold0056 (691-730)||(76644-76683)


Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 10 - 608
Target Start/End: Original strand, 43481820 - 43482418
Alignment:
Q  10 gtttggtgtttaataaaatttagttaatttgataagaaaaattaggctgtttaaaaggcgagtgttcaaaatactcnnnnnnnagtaattttctaacact 109  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  43481820 gttttgtgtttaataaaatttagttcatttgataagaaaaattaggctgtttaaaaggcgagtgttcaaaatactctttttttagtaattttctaacact 43481919  T
Q  110 catttatttgattcaattcatgagcccctccattttatgtgacacttatttttaaaatgtaggactcacattgatttgacctaataaatgagctagactt 209  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43481920 catttatttgattcaattcatgagtccctccattttatgtgacacttatttttaaaatgtaggactcacattgatttgacctaataaatgagctagactt 43482019  T
Q  210 attagtagtgtagccttcaactaaaattgatcgatgaagcttctataagatgccacttcttaactaccttgcacggtgctcacccagtcatggtgagatt 309  Q
    |||||||||||||||||||||| | |||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  43482020 attagtagtgtagccttcaactgagattgatcgatgaagcttctatatgataccatttcttaactaacttgcacggtgctcacccagtcatggtgagatt 43482119  T
Q  310 aattgtttgataagtacaacaatacttacaattctcatcaatattagactattagtttggatgagctaatttaaattcttagaaaagtacaacaatactt 409  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43482120 aattgtttgataagtacaacaatactcacaattctcatcaatattagactattagtttggatgagctaatttaaattcttagaaaagtacaacaatactt 43482219  T
Q  410 actcttattttgttaagagtctaggagtggagtctccaaatattaaaattttgtttggtaacacaaataaattaggggataagttattagattaatttat 509  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43482220 actcttattttgttaagagtctatgagtggagtctccaaatattaaaattttgtttggtaacacaaataaattaggggataagttattagattaatttat 43482319  T
Q  510 aagcttgttagagaaaagtcaaattatgatcgtagtaaattgacttaaaaatatatttttgttaagtgaaatgatatttgtacaacacctttgcgacaa 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  43482320 aagcttgttagagaaaagtcaaattatgatcgtagtaaattgacttaaaaatatatttttgttaagtgaaatgatatttgtataacccctttgcgacaa 43482418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 664 - 816
Target Start/End: Original strand, 43482474 - 43482626
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatccattttattaataaagacaaggagtgacatcca 763  Q
    ||||||| |||  ||| ||||||||| |||||||||||||||| |||||||||||||||||||||||  |||| ||||||| ||||||||||||||||||    
T  43482474 aaccaataaaagaagaaagaaaaaagaagttgtcacaaaaattgtatcaaatagttgttcaaatatctcttttgttaataaggacaaggagtgacatcca 43482573  T
Q  764 acgcatccattattaaagttaccgtgacatataattatgattggagttaatgg 816  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43482574 acgcatccattattaaagttaccgtgacatataattatgattggagttaatgg 43482626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 34381124 - 34381187
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||  ||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  34381124 accaatgaaaagag--agaaaaacgaagttgtcacaaaaattatatcaaatggttgttcaaatatc 34381187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 679 - 730
Target Start/End: Complemental strand, 2117587 - 2117536
Alignment:
Q  679 agagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  2117587 agagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatc 2117536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 11306807 - 11306871
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||  ||||||||| ||||||| ||||| || |||||||||||||||||||||||    
T  11306807 aaccaatgaaaagag--agaaaaaagaagttgtctcaaaagttgtatcaaatagttgttcaaatatc 11306871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 39595386 - 39595449
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||  ||||||||| ||||||||||||| || |||||||| ||||||||||||||    
T  39595386 accaatgaaaagag--agaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatc 39595449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 5130338 - 5130273
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcaca-aaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||  |||||| |||||||||| |||||| ||| |||||||||||||||||||    
T  5130338 aaccaatgaaaagagaga--aaaaagaagttgtcacaaaaaattgtatgaaatagttgttcaaatatc 5130273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 125204 - 125267
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||  ||||||||| ||||||| ||||| || |||||||| ||||||||||||||    
T  125204 accaatgaaaagag--agaaaaaagaagttgtcgcaaaagttgtatcaaatggttgttcaaatatc 125267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 665 - 729
Target Start/End: Complemental strand, 6865746 - 6865684
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatat 729  Q
    ||||||||||||||||| || |||  |||||||| | | ||||||||||||||||||||||||||    
T  6865746 accaatgaaaagagagaaaataaa--agttgtcaaatagattatatcaaatagttgttcaaatat 6865684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 42532255 - 42532292
Alignment:
Q  693 ttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||| |||||||||||||||||||    
T  42532255 ttgtcacaaaaattatatgaaatagttgttcaaatatc 42532292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 10232610 - 10232675
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtca-caaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||  ||||||||| |||||||| ||||| || ||| |||||||||||||||||||    
T  10232610 aaccaatgaaaagag--agaaaaaagaagttgtcaccaaaagttgtataaaatagttgttcaaatatc 10232675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 12661907 - 12661842
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaa-ttatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||  |||||| ||||||||| |||| || ||| |||||||||||||||||||    
T  12661907 aaccaatgaaaagagaga--aaaaagaagttgtcaccaaaagttgtatgaaatagttgttcaaatatc 12661842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 21749469 - 21749534
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcac-aaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||  |||||| | ||||||| ||||||||||| |||| ||||||||||||||    
T  21749469 aaccaatgaaaagagaga--aaaaagaaattgtcaccaaaaattatataaaatggttgttcaaatatc 21749534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 31284354 - 31284290
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||||||| |  ||||||| ||||| || ||| |||| ||||||||||||||    
T  31284354 aaccaatgaaaagagagagaaaaga--agttgtcgcaaaagttgtatgaaatggttgttcaaatatc 31284290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 20719974 - 20719911
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||||| |  ||||||||||||| || | |||||| | ||||||||||||    
T  20719974 accaatgaaaagagagagaaaaga--agttgtcacaaaagttgtctcaaatggatgttcaaatatc 20719911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 33567198 - 33567135
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||  |||||| | ||||||||||| || |||||||| |||||||| |||||    
T  33567198 accaatgaaaagagaga--aaaaagaaattgtcacaaaagttgtatcaaatggttgttcatatatc 33567135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 34767376 - 34767313
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||||| |  ||||||||||| | || | |||||||| ||||||||||||    
T  34767376 accaatgaaaagagagagaaaaga--agttgtcacaagagttgtctcaaatagatgttcaaatatc 34767313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 679 - 730
Target Start/End: Complemental strand, 32853091 - 32853040
Alignment:
Q  679 agagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  32853091 agagaaaaaagaagttgtcacaaaaattgtatcaaatagttgttcaaatatc 32853040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 32253891 - 32253956
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||||||||  | ||||||||||| || || ||||||||||||||||||||    
T  32253891 aaccaatgaaaagagagagaaaaaaaaa-ttgtcacaaaagttgtaccaaatagttgttcaaatatc 32253956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 1897798 - 1897861
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||  |||||||||  |||||||||||| || | |||||||| ||||||||||||    
T  1897798 accaatgaaaagag--agaaaaaagaggttgtcacaaaagttgtttcaaatagatgttcaaatatc 1897861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 730
Target Start/End: Original strand, 2582784 - 2582837
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||  |||||||||||| || | |||||||| ||||||||||||    
T  2582784 agagagaaaaaagaggttgtcacaaaagttgtttcaaatagatgttcaaatatc 2582837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 730
Target Start/End: Complemental strand, 21857518 - 21857465
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||| |||||||| ||||||| | ||| |||||| ||||||||||    
T  21857518 agagagaaaaaagaagttgtcataaaaattgtctcatatagttattcaaatatc 21857465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 42915179 - 42915115
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||  |||||| ||||||||||||| || |||||||||||||||||||||||    
T  42915179 aaccaatgaaaagagaga--aaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatc 42915115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 677 - 730
Target Start/End: Complemental strand, 30778213 - 30778160
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||| | |||||| |||| ||||||||||||||||||||||||||    
T  30778213 agagagaaaaaagaaattgtcataaaagttatatcaaatagttgttcaaatatc 30778160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 677 - 730
Target Start/End: Original strand, 51389438 - 51389491
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||| ||||||||||||| || |||||||| ||||||||||||||    
T  51389438 agagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatc 51389491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 48372186 - 48372121
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcac-aaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||  |||||| ||||||||| ||||||| ||| |||||||||||||||||||    
T  48372186 aaccaatgaaaagagaga--aaaaagaagttgtcactaaaaattgtatgaaatagttgttcaaatatc 48372121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 28480498 - 28480434
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||||||| |  ||||||||||| | || | |||||||||||||||||||||    
T  28480498 aaccaatgaaaagagagagaaaaga--agttgtcacaatagttgtctcaaatagttgttcaaatatc 28480434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 28481372 - 28481308
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||||||| |  ||||||||||| | || | |||||||||||||||||||||    
T  28481372 aaccaatgaaaagagagagaaaaga--agttgtcacaatagttgtctcaaatagttgttcaaatatc 28481308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 28482247 - 28482183
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||||||| |  ||||||||||| | || | |||||||||||||||||||||    
T  28482247 aaccaatgaaaagagagagaaaaga--agttgtcacaatagttgtctcaaatagttgttcaaatatc 28482183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 31275258 - 31275321
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||  ||||||||| | ||||||||||| || |||||||| ||||||||||||||    
T  31275258 accaatgaaaagag--agaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcaaatatc 31275321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 677 - 730
Target Start/End: Complemental strand, 36408153 - 36408100
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||| ||||||| | ||||||||||| || |||||||||||||||||||||||    
T  36408153 agagaaaaaaaagaaattgtcacaaaagttgtatcaaatagttgttcaaatatc 36408100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 677 - 730
Target Start/End: Complemental strand, 36413276 - 36413223
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||| ||||||| | ||||||||||| || |||||||||||||||||||||||    
T  36413276 agagaaaaaaaagaaattgtcacaaaagttgtatcaaatagttgttcaaatatc 36413223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 716
Target Start/End: Original strand, 9162178 - 9162227
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaata 716  Q
    ||||||||||||||  ||||||||| |||||||||||||||| |||||||||    
T  9162178 accaatgaaaagag--agaaaaaagaagttgtcacaaaaattgtatcaaata 9162227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 730
Target Start/End: Complemental strand, 46213016 - 46212977
Alignment:
Q  691 agttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  46213016 agttgtcacaaaaattataaaaaatagttgttcaaatatc 46212977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 666 - 730
Target Start/End: Complemental strand, 1580241 - 1580178
Alignment:
Q  666 ccaatgaaaagagagagaaaaaaggagttgtcacaaaaa-ttatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||| ||||||  |||||||||||||| || ||| |||| ||||||||||||||    
T  1580241 ccaatgaaaagagagaaaaaaaa--agttgtcacaaaaagttgtatgaaatggttgttcaaatatc 1580178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 4896459 - 4896396
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||| |||| |||  ||||||||||| || | |||||||| ||||||||||||    
T  4896459 accaatgaaaagagagaaaaaagagg--ttgtcacaaaagttgtttcaaatagatgttcaaatatc 4896396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 5234430 - 5234367
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||| |||||||||| ||||||  | ||||||||||| || |||||||| ||||||||||||||    
T  5234430 accaataaaaagagagaaaaaaaa--aattgtcacaaaagttgtatcaaatggttgttcaaatatc 5234367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 23690343 - 23690406
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||  |||||||||   |||||||||||||| | |||||||| ||||||||||||    
T  23690343 accaatgaaaagag--agaaaaaagatattgtcacaaaaattgtttcaaatagatgttcaaatatc 23690406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Original strand, 31658044 - 31658094
Alignment:
Q  680 gagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||| |||||||||||||  | |||||||| ||||||||||||||    
T  31658044 gagaaaaaagaagttgtcacaaaagctgtatcaaatggttgttcaaatatc 31658094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 668 - 730
Target Start/End: Original strand, 44166023 - 44166084
Alignment:
Q  668 aatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||| | ||||||  |||||| ||||||||||||||||||| ||||| |||||||    
T  44166023 aatgaaaagagaaaaaaaaaaa-agttgttacaaaaattatatcaaataattgtttaaatatc 44166084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 47471912 - 47471975
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||| ||||||||||||||| |  ||||||||||||||||||  |||||| || ||||||||||    
T  47471912 accaataaaaagagagagaaaata--agttgtcacaaaaattattgcaaataattattcaaatatc 47471975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 55927096 - 55927159
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||||| |  | |||||||||||||| | |||||| | ||||||||||||    
T  55927096 accaatgaaaagagagagaaaaga--aattgtcacaaaaattgtctcaaatggatgttcaaatatc 55927159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 22257156 - 22257092
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtca-caaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||||||||   |||||||| ||||| || ||| |||| ||||||||||||||    
T  22257156 aaccaatgaaaagagagagaaaaa---agttgtcaccaaaagttgtatgaaatggttgttcaaatatc 22257092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 730
Target Start/End: Original strand, 41952942 - 41953004
Alignment:
Q  667 caatgaaaagagagagaaaaaaggagttgtcacaaaaa-ttatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||| ||||||  ||||||||| |||| |||||| |||| ||||||||||||||    
T  41952942 caatgaaaagagagaaaaaaaa--agttgtcaccaaaagttatatgaaatggttgttcaaatatc 41953004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 730
Target Start/End: Complemental strand, 47134798 - 47134734
Alignment:
Q  666 ccaatgaaaagagagagaaaaaaggagttgtcac-aaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||| |||||||||| || |||  ||||||||| ||||||||||| |||||||||||||||||||    
T  47134798 ccaataaaaagagagaaaagaaaa-agttgtcacgaaaaattatatgaaatagttgttcaaatatc 47134734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 11164336 - 11164272
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||  |||||| ||||||||||||| || |||||||||||||||||||||||    
T  11164336 aaccaatgaaaagagaga--aaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatc 11164272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 12600159 - 12600223
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||  ||||||||| ||||||||||||| || ||| |||||||||||||||||||    
T  12600159 aaccaatgaaaagag--agaaaaaagaagttgtcacaaaagttgtatgaaatagttgttcaaatatc 12600223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 36133085 - 36133149
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||  ||||||||| ||||||||||||| || ||| |||||||||||||||||||    
T  36133085 aaccaatgaaaagag--agaaaaaagaagttgtcacaaaagttgtatgaaatagttgttcaaatatc 36133149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 3091853 - 3091916
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||  ||||||||| ||||||||||||| || ||||||||| |||||||||||||    
T  3091853 accaatgaaaagag--agaaaaaagaagttgtcacaaaagttgtatcaaataattgttcaaatatc 3091916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 12962497 - 12962561
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||| ||||||||||||||| |  | |||| |||||| ||||||||||||||||||||||||||    
T  12962497 aaccaattaaaagagagagaaaaga--aattgttacaaaatttatatcaaatagttgttcaaatatc 12962561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 13711172 - 13711236
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||  ||||||||| ||||||||||||| || ||  |||||||||||||||||||    
T  13711172 aaccaatgaaaagag--agaaaaaagaagttgtcacaaaagttgtacaaaatagttgttcaaatatc 13711236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 728
Target Start/End: Complemental strand, 7086083 - 7086022
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaata 728  Q
    |||||||||||||||||||||| |  |||||||||||||||| | ||| || ||||||||||||    
T  7086083 accaatgaaaagagagagaaaata--agttgtcacaaaaattgtctcatatggttgttcaaata 7086022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 730
Target Start/End: Original strand, 14714100 - 14714161
Alignment:
Q  667 caatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||| |  |||||||||||||||| | |||||| | ||||||||||||    
T  14714100 caatgaaaagagagagaaaaga--agttgtcacaaaaattgtctcaaatggatgttcaaatatc 14714161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 665 - 728
Target Start/End: Original strand, 34249692 - 34249754
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaata 728  Q
    ||||||||||||||||| ||||||  |||||||||||||||| | ||| || ||||||||||||    
T  34249692 accaatgaaaagagaga-aaaaaataagttgtcacaaaaattgtctcatatggttgttcaaata 34249754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 722
Target Start/End: Original strand, 39285977 - 39286020
Alignment:
Q  679 agagaaaaaaggagttgtcacaaaaattatatcaaatagttgtt 722  Q
    ||||||||||| ||||||||||||| || |||||||||||||||    
T  39285977 agagaaaaaagaagttgtcacaaaagttgtatcaaatagttgtt 39286020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 34442225 - 34442288
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||| ||||||||||||||| |||  |||||| ||||||| | |||||||| ||||||||||||    
T  34442225 accaataaaaagagagagaaaagagg--ttgtcagaaaaattgtttcaaatagatgttcaaatatc 34442288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 36376810 - 36376747
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||  |||||| |||||| | ||||||||| |||| ||| ||||||||||||    
T  36376810 accaatgaaaagagaga--aaaaagaagttgttaaaaaaattatctcaattagatgttcaaatatc 36376747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 2362480 - 2362544
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||| |||||||||| |  |||||||||||||||| |||||||||||||||||||||||    
T  2362480 aaccaatgaaaaaagagagaaaaga--agttgtcacaaaaattgtatcaaatagttgttcaaatatc 2362544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 664 - 727
Target Start/End: Original strand, 36418190 - 36418251
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaat 727  Q
    ||||||||||||||||||||||| |  ||||||||||||| || ||||||||||||||||||||    
T  36418190 aaccaatgaaaagagagagaaaaga--agttgtcacaaaagttgtatcaaatagttgttcaaat 36418251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 37843392 - 37843331
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||| |||||     |||||||| |||||||||||||||||||||||||||||    
T  37843392 aaccaatgaaaagagagaaaaaaa-----ttgtcacacaaattatatcaaatagttgttcaaatatc 37843331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 31480095 - 31480030
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcac-aaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||| ||||||  ||||||||| ||||||| ||| |||||||||||||||||||    
T  31480095 aaccaatgaaaagagagaaaaaaaa--agttgtcaccaaaaattgtatgaaatagttgttcaaatatc 31480030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 49453591 - 49453652
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||| ||||     |||||||||||| || |||||||||||||||||||||||    
T  49453591 aaccaatgaaaagagagaaaaaa-----gttgtcacaaaagttgtatcaaatagttgttcaaatatc 49453652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 730
Target Start/End: Original strand, 51571550 - 51571601
Alignment:
Q  679 agagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||| ||||||||||||| || ||| |||| ||||||||||||||    
T  51571550 agagaaaaaagaagttgtcacaaaagttgtattaaatggttgttcaaatatc 51571601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 22389484 - 22389422
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||  |||||| ||||||||||||| ||  ||||||| ||||||||||||||    
T  22389484 accaatgaaaagagaga--aaaaagaagttgtcacaaaagtt-gatcaaatggttgttcaaatatc 22389422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 40610341 - 40610404
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||||| |  ||||||||||||| || | |||||| | ||||||||||||    
T  40610341 accaatgaaaagagagagaaaaga--agttgtcacaaaagttgtctcaaatggatgttcaaatatc 40610404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Complemental strand, 45740490 - 45740440
Alignment:
Q  680 gagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||| |||||||| ||||||||| ||||||  |||||||||||||    
T  45740490 gagaaaaaagaagttgtcataaaaattatttcaaatgattgttcaaatatc 45740440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 716
Target Start/End: Original strand, 37690526 - 37690576
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaata 716  Q
    ||||||||||||||||||||||| |  ||||||||||||| || |||||||||    
T  37690526 aaccaatgaaaagagagagaaaaga--agttgtcacaaaagttgtatcaaata 37690576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 49813946 - 49813999
Alignment:
Q  143 tttatgtgacacttatttttaaaatgtaggactcacattgatttgacctaataa 196  Q
    ||||||||| ||| || |||||| |||||||||||||||||||| | |||||||    
T  49813946 tttatgtgaaactcatatttaaagtgtaggactcacattgatttcatctaataa 49813999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 28927793 - 28927856
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||||| |  |||||||||||||||| |||||||| ||||||||||||||    
T  28927793 accaatgaaaagagagagaaaaga--agttgtcacaaaaattttatcaaatggttgttcaaatatc 28927856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 5502472 - 5502537
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||| ||||| | ||| |||||||||||||||||||||||||  |||||||||||||    
T  5502472 accaatgaaaagatagagagagaagaagttgtcacaaaaattatatcaaatgattgttcaaatatc 5502537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 16011877 - 16011816
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaat 727  Q
    ||||||||||||||||||  |||||| | |||||||||||||||||| ||||||||||||||||    
T  16011877 aaccaatgaaaagagaga--aaaaagaaattgtcacaaaaattatattaaatagttgttcaaat 16011816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 7678843 - 7678907
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||  ||||||||| |||||| |||||| || |||||||||||||||||||||||    
T  7678843 aaccaatgaaaagag--agaaaaaagaagttgttacaaaagttgtatcaaatagttgttcaaatatc 7678907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 23258144 - 23258207
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||  ||||||||| |||||||||||||||| | |||||| ||||||||||||||    
T  23258144 accaatgaaaagag--agaaaaaagaagttgtcacaaaaattgtttcaaatggttgttcaaatatc 23258207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 21273670 - 21273606
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||| || |||  ||||||||||||| || ||| |||||||||||||||||||    
T  21273670 aaccaatgaaaagagagaaaagaaa--agttgtcacaaaagttgtatgaaatagttgttcaaatatc 21273606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 667 - 730
Target Start/End: Original strand, 1179490 - 1179551
Alignment:
Q  667 caatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||| ||| | ||||||  ||||||||||||| |||||||||||||||||| |||||||    
T  1179490 caatgaaaaaagaaaaaaaaaa--agttgtcacaaaagttatatcaaatagttgtttaaatatc 1179551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 730
Target Start/End: Complemental strand, 9047003 - 9046967
Alignment:
Q  694 tgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||| |||||||||||||||||||||||    
T  9047003 tgtcacaaaaattgtatcaaatagttgttcaaatatc 9046967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 37101646 - 37101581
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcac-aaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||  |||||| ||||||||| ||||||| ||| |||| ||||||||||||||    
T  37101646 aaccaatgaaaagagaga--aaaaagaagttgtcacgaaaaattgtatgaaatggttgttcaaatatc 37101581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 730
Target Start/End: Original strand, 27673001 - 27673040
Alignment:
Q  691 agttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  27673001 agttgtcacaaaagttatatctaatagttgttcaaatatc 27673040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 44672193 - 44672129
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||  |||||| |  |||||||||| || ||||||||| |||||||||||||    
T  44672193 aaccaatgaaaagagaga--aaaaagaatgtgtcacaaaagttgtatcaaataattgttcaaatatc 44672129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 37524387 - 37524324
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||| |||| |||  ||||||||||  |||| |||||||| ||||||||||||    
T  37524387 accaatgaaaagagagaaaaaagagg--ttgtcacaaaggttatttcaaatagatgttcaaatatc 37524324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Complemental strand, 38128472 - 38128422
Alignment:
Q  680 gagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||| |||||||||||||||| | | |||| ||||||||||||||    
T  38128472 gagaaaaaagaagttgtcacaaaaattgtttaaaatggttgttcaaatatc 38128422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Complemental strand, 42941633 - 42941583
Alignment:
Q  680 gagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||| |||||||||||||| ||| ||||||  |||||||||||||    
T  42941633 gagaaaaaagaagttgtcacaaaaaatatttcaaattattgttcaaatatc 42941583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 44103876 - 44103941
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||||||||  |||| |||||| | |||| | |||| ||||||||||||||    
T  44103876 aaccaatgaaaagagagagaaaaaa-aagttatcacaatagttatcttaaatggttgttcaaatatc 44103941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 728
Target Start/End: Original strand, 295670 - 295719
Alignment:
Q  679 agagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaata 728  Q
    ||||||||||  | ||||||||||| |||| |||||||||||||||||||    
T  295670 agagaaaaaataaattgtcacaaaagttatctcaaatagttgttcaaata 295719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 18538489 - 18538553
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||| ||||||| || ||||||| ||||||||||||| ||  | ||||||||||||||||||||    
T  18538489 accaataaaaagaggga-aaaaaagaagttgtcacaaaagttgaaccaaatagttgttcaaatatc 18538553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 730
Target Start/End: Complemental strand, 40413312 - 40413259
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||| |||| ||| |||| || |||||||| ||||||||||||||    
T  40413312 agagagaaaaaagaagttatcataaaagttgtatcaaatggttgttcaaatatc 40413259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 29706015 - 29706078
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||  ||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  29706015 accaatgaaaagag--agaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatc 29706078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 51650465 - 51650532
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtca-caaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||||||||| |||||||| ||||| || ||| |||| ||||||||||||||    
T  51650465 aaccaatgaaaagagagagaaaaaagaagttgtcaccaaaagttgtatgaaatggttgttcaaatatc 51650532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 665 - 729
Target Start/End: Original strand, 11173562 - 11173624
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatat 729  Q
    ||||||||||||||  ||||||||| ||||||||||||| || |||||||| |||||||||||||    
T  11173562 accaatgaaaagag--agaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatat 11173624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 665 - 728
Target Start/End: Original strand, 33007472 - 33007534
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaata 728  Q
    ||||||||||||||||| ||||||| |||||||||||||||| | ||| || ||||||||||||    
T  33007472 accaatgaaaagagaga-aaaaaagaagttgtcacaaaaattgtctcatatggttgttcaaata 33007534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 32457715 - 32457649
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaa--ttatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||  |||||| |||||||| |||||  || |||||||||||||||||||||||    
T  32457715 aaccaatgaaaagagaga--aaaaagaagttgtcaaaaaaaaattgtatcaaatagttgttcaaatatc 32457649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 46473240 - 46473303
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||  ||||||||| |||||||| |||| || |||||||| ||||||||||||||    
T  46473240 accaatgaaaagag--agaaaaaagaagttgtcataaaagttgtatcaaatggttgttcaaatatc 46473303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 32687920 - 32687855
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaa-ttatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||  |||||| |||| |||| |||| || |||||||||||||||||||||||    
T  32687920 aaccaatgaaaagagaga--aaaaagaagttatcaccaaaagttgtatcaaatagttgttcaaatatc 32687855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 36318242 - 36318176
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcac-aaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||  |||||||||| | ||||||||| ||||||||||| |||| ||||||||||||||    
T  36318242 aaccaatgaaaaaggagagaaaaa-gaagttgtcaccaaaaattatatgaaatggttgttcaaatatc 36318176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 730
Target Start/End: Original strand, 49130969 - 49131029
Alignment:
Q  668 aatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||| |  |||||||||||||||| | |||||| | ||||||||||||    
T  49130969 aatgaaaagagagagaaaaga--agttgtcacaaaaattgtctcaaatggatgttcaaatatc 49131029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 7231965 - 7231902
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||| |||| |  | ||||||||||| || |||||||| ||||||||||||||    
T  7231965 accaatgaaaagagagaaaaaata--aattgtcacaaaagttgtatcaaatggttgttcaaatatc 7231902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 666 - 730
Target Start/End: Complemental strand, 44365250 - 44365187
Alignment:
Q  666 ccaatgaaaagagagagaaaaaaggagttgtca-caaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||  ||||| |||||||| |||||||| ||| |||| ||||||||||||||    
T  44365250 ccaatgaaaagagagag--aaaagaagttgtcaccaaaaattgtataaaatggttgttcaaatatc 44365187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 730
Target Start/End: Original strand, 28539767 - 28539804
Alignment:
Q  693 ttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||  |||||||||||||||||||    
T  28539767 ttgtcacaaaaattataaaaaatagttgttcaaatatc 28539804  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 36111 - 36177
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaa-ttatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||| ||||||  |||||||||||||| || |||||||| ||||||||||||||    
T  36111 accaatgaaaagagagaaaaaaaacaagttgtcacaaaaagttgtatcaaatggttgttcaaatatc 36177  T

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Target: scaffold0036 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 18115 - 18178
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||| |||||||   |||||| |||| || |||||||||||||||||||||||    
T  18115 aaccaatgaaaagagagaaaaaaaag---ttgtcataaaagttgtatcaaatagttgttcaaatatc 18178  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 6353839 - 6353904
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||| ||||| ||||||| | ||||||||||| || |||||||||||| ||||||||||    
T  6353839 aaccaatgaaaaaagaga-aaaaaagaaattgtcacaaaagttgtatcaaatagtttttcaaatatc 6353904  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 12141996 - 12142059
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||| ||| ||||||  ||||||||||||| || |||||||| ||||||||||||||    
T  12141996 accaatgaaaagaaagaaaaaaaa--agttgtcacaaaagttgtatcaaatggttgttcaaatatc 12142059  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 730
Target Start/End: Complemental strand, 44894433 - 44894370
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||| |||| |  |||||||||||||||||| |||||| | ||||||||||||    
T  44894433 accaatgaaaagagagataaaaga--agttgtcacaaaaattatctcaaatggatgttcaaatatc 44894370  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 677 - 730
Target Start/End: Complemental strand, 37351939 - 37351886
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||| | ||||||||||| |||||||||||  |||||||||||||    
T  37351939 agagagaaaaaagaaattgtcacaaaagttatatcaaatgattgttcaaatatc 37351886  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 730
Target Start/End: Complemental strand, 21839080 - 21839029
Alignment:
Q  679 agagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||  | |||| ||||||||| |||||||||||||||||||||||    
T  21839080 agagaaaaaataaattgttacaaaaattgtatcaaatagttgttcaaatatc 21839029  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 666 - 730
Target Start/End: Complemental strand, 22330589 - 22330527
Alignment:
Q  666 ccaatgaaaagagagagaaaaaaggagttgtcac-aaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||| |||||||   ||||||| ||||||||||| |||| ||||||||||||||    
T  22330589 ccaatgaaaagagagaaaaaaaag---ttgtcaccaaaaattatatgaaatggttgttcaaatatc 22330527  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 28596988 - 28597055
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtca-caaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||| ||||||| | |||||| ||||| || ||| |||| ||||||||||||||    
T  28596988 aaccaatgaaaagagagaaaaaaaagaatttgtcaccaaaagttgtatgaaatggttgttcaaatatc 28597055  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Original strand, 10591277 - 10591327
Alignment:
Q  680 gagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||| ||||||||||||| || | |||||| ||||||||||||||    
T  10591277 gagaaaaaagaagttgtcacaaaagttgtctcaaatggttgttcaaatatc 10591327  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 677 - 730
Target Start/End: Complemental strand, 40717188 - 40717134
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaa-ttatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||| |||||||||||||| || ||| |||| ||||||||||||||    
T  40717188 agagagaaaaaagaagttgtcacaaaaagttgtatgaaatggttgttcaaatatc 40717134  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 680 - 730
Target Start/End: Original strand, 41966453 - 41966503
Alignment:
Q  680 gagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||| |||||||| ||||||| | | |||||||||||||||||||    
T  41966453 gagaaaaaagaagttgtcataaaaattgtttaaaatagttgttcaaatatc 41966503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 730
Target Start/End: Original strand, 46651784 - 46651847
Alignment:
Q  665 accaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||  ||| || ||||||||||| |||| ||||| || ||||||||||||||    
T  46651784 accaatgaaaagagaga--aaatagaagttgtcacaagaattgtatcatatggttgttcaaatatc 46651847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 730
Target Start/End: Original strand, 2414174 - 2414236
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||||||||||||||| ||    ||||||||| ||||| | |||| ||||||||||||||||    
T  2414174 aaccaatgaaaagagagagaagaa----gttgtcacataaattgtctcaactagttgttcaaatatc 2414236  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 730
Target Start/End: Original strand, 30180629 - 30180682
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||  |||||| |||||||| | |||||||| ||||||||||||    
T  30180629 agagagaaaaaagaggttgtcgcaaaaattgtttcaaatagatgttcaaatatc 30180682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 730
Target Start/End: Original strand, 43445533 - 43445582
Alignment:
Q  681 agaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    ||||||||| | |||||||||||||| ||||||||  |||||||||||||    
T  43445533 agaaaaaagaaattgtcacaaaaattgtatcaaatgattgttcaaatatc 43445582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 730
Target Start/End: Complemental strand, 48866879 - 48866826
Alignment:
Q  677 agagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||  |||||||||||| || | |||||||| ||||||||||||    
T  48866879 agagagaaaaaagaggttgtcacaaaagttgtttcaaatagatgttcaaatatc 48866826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 730
Target Start/End: Complemental strand, 15148 - 15085
Alignment:
Q  664 aaccaatgaaaagagagagaaaaaaggagttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||| |||||   ||||| ||||||||||||| || || ||||||||||||||||||||    
T  15148 aaccaatgaaaaaagaga---aaaagaagttgtcacaaaagttgtaccaaatagttgttcaaatatc 15085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 730
Target Start/End: Original strand, 76644 - 76683
Alignment:
Q  691 agttgtcacaaaaattatatcaaatagttgttcaaatatc 730  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  76644 agttgtcacaaaaattataaaaaatagttgttcaaatatc 76683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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