View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9016_low_20 (Length: 443)

Name: NF9016_low_20
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9016_low_20
NF9016_low_20
[»] chr1 (6 HSPs)
chr1 (43-428)||(41752033-41752412)
chr1 (260-370)||(44586417-44586523)
chr1 (9-45)||(41752573-41752609)
chr1 (251-303)||(13569684-13569736)
chr1 (212-252)||(18542596-18542636)
chr1 (251-303)||(10802110-10802162)
[»] chr7 (2 HSPs)
chr7 (9-196)||(34225122-34225309)
chr7 (9-196)||(34229250-34229437)
[»] chr8 (2 HSPs)
chr8 (251-361)||(9670686-9670792)
chr8 (251-303)||(25130950-25131002)
[»] chr4 (2 HSPs)
chr4 (266-379)||(55465035-55465144)
chr4 (211-252)||(43301704-43301745)
[»] chr3 (3 HSPs)
chr3 (248-352)||(31986109-31986214)
chr3 (251-303)||(43585452-43585504)
chr3 (252-303)||(53707496-53707547)
[»] chr5 (1 HSPs)
chr5 (251-303)||(22541396-22541448)
[»] scaffold0170 (1 HSPs)
scaffold0170 (251-363)||(7950-8062)
[»] chr6 (1 HSPs)
chr6 (211-252)||(20623863-20623904)
[»] scaffold0001 (2 HSPs)
scaffold0001 (253-303)||(141678-141728)
scaffold0001 (211-252)||(141743-141784)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 43 - 428
Target Start/End: Complemental strand, 41752412 - 41752033
Alignment:
Q  43 atgtttccatttagagagattgcagcaaaatactatttgcaaaaatctgaagaaataaattagaacaatgatgcgtgtttattcttaattaaaggaaatc 142  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  41752412 atgtttccatttagagagattgcagcaaaaaattatttgcaaaaatctgaagaactaaattagaacaatgatgtgtgtttattcttaattaaaggaaatc 41752313  T
Q  143 aaaattaggcttgcagagtatcaattcaacataaaagttactagtttattagaag-aagaaaaaacacgcaaacaaaaagaagaatcaacaattctgaat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| |||||    
T  41752312 aaaattaggcttgcagagtatcaattcaacataaaagttactagtttattagaagaaaaaaaaaacacgcaaacaaagagaagaatcaacaattatgaat 41752213  T
Q  242 tagggtttggggataattaacaattctaaattgcggtttagaatttgaataatcaactcattcacccattaattaacaaacaacaagcatcagcaataaa 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||| ||| |||    
T  41752212 tagggtttggggataattaacaattctaaattgcggtttagaatttgaataatcaactcattca-ccattaacaaacaaacaacaagcatcaacaacaaa 41752114  T
Q  342 atagaacaaatgacaaagaaaataacatataagtagaagtagaagtagaaggagaagacttctcaattttgtacgcgcctgaaaaat 428  Q
    ||||||||||| |||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41752113 atagaacaaataacaaagaaaataaca------tagaagtagaagtagaaggagaagacttctcaattttgtacgcgcctgaaaaat 41752033  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 44586417 - 44586523
Alignment:
Q  260 aacaattctaaattgcggtttagaatttgaataatcaactcattcacccattaattaacaaacaacaagcatcagcaataaaatagaacaaatgacaaag 359  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||| ||||||||||| ||| |||||||||||||| ||||||    
T  44586417 aacaattctaaattgcggtttggaatttgaataatcaactcattcaccc----attaacaaataacaagcatcaacaacaaaatagaacaaataacaaag 44586512  T
Q  360 aaaataacata 370  Q
    |||||||||||    
T  44586513 aaaataacata 44586523  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 41752609 - 41752573
Alignment:
Q  9 attattctataccctctctaacatatatggtgacatg 45  Q
    |||||||||||||||||||||||||||||||||||||    
T  41752609 attattctataccctctctaacatatatggtgacatg 41752573  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 13569684 - 13569736
Alignment:
Q  251 gggataattaacaattctaaattgcggtttagaatttgaataatcaactcatt 303  Q
    |||||||| ||||||| |||||||| |||| |||||| |||||||||||||||    
T  13569684 gggataatcaacaattataaattgcagttttgaatttaaataatcaactcatt 13569736  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 18542596 - 18542636
Alignment:
Q  212 aaacaaaaagaagaatcaacaattctgaattagggtttggg 252  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  18542596 aaacaaagagaagaatcaacaattctaaattagggtttggg 18542636  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 10802110 - 10802162
Alignment:
Q  251 gggataattaacaattctaaattgcggtttagaatttgaataatcaactcatt 303  Q
    |||||||| || |||| |||||||| |||| |||||| |||||||||||||||    
T  10802110 gggataatcaataattataaattgcagttttgaatttaaataatcaactcatt 10802162  T

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Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 34225122 - 34225309
Alignment:
Q  9 attattctataccctctctaacatatatggtgacatgtttccatttagagagattgcagcaaaatactatttgcaaaaatctgaagaaataaattagaac 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  34225122 attattctataccctctctaacatatatagtgacatgtttccatttggagagatggcagcaaaatattatttgcaaaaatctgaagaactaaattagaac 34225221  T
Q  109 aatgatgcgtgtttattcttaattaaaggaaatcaaaattaggcttgcagagtatcaattcaacataaaagttactagtttattagaa 196  Q
    ||||||| |||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34225222 aatgatgtgtgtttattcttgattaaatgagatcaaaattaggcttgcagagtatcaattcaacataaaagttaccagtttattagaa 34225309  T

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Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 34229250 - 34229437
Alignment:
Q  9 attattctataccctctctaacatatatggtgacatgtttccatttagagagattgcagcaaaatactatttgcaaaaatctgaagaaataaattagaac 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  34229250 attattctataccctctctaacatatatagtgacatgtttccatttggagagatggcagcaaaatattatttgcaaaaatctgaagaactaaattagaac 34229349  T
Q  109 aatgatgcgtgtttattcttaattaaaggaaatcaaaattaggcttgcagagtatcaattcaacataaaagttactagtttattagaa 196  Q
    ||||||| |||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34229350 aatgatgtgtgtttattcttgattaaatgagatcaaaattaggcttgcagagtatcaattcaacataaaagttaccagtttattagaa 34229437  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 251 - 361
Target Start/End: Original strand, 9670686 - 9670792
Alignment:
Q  251 gggataattaacaattctaaattgcggtttagaatttgaataatcaactcattcacccattaattaacaaacaacaagcatcagcaataaaatagaacaa 350  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||||| ||||| |||||  |||||||||||||||    
T  9670686 gggattatcaacaattctaaattgcggtttggaatttgaataatcaactcattcaccc----attaacaaataacaaccatcattaataaaatagaacaa 9670781  T
Q  351 atgacaaagaa 361  Q
    || ||| ||||    
T  9670782 ataacatagaa 9670792  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 25130950 - 25131002
Alignment:
Q  251 gggataattaacaattctaaattgcggtttagaatttgaataatcaactcatt 303  Q
    |||||||| ||||||| |||||||| |||| |||||| |||||||||||||||    
T  25130950 gggataatcaacaattataaattgcagttttgaatttaaataatcaactcatt 25131002  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 379
Target Start/End: Original strand, 55465035 - 55465144
Alignment:
Q  266 tctaaattgcggtttagaatttgaataatcaactcattcacccattaattaacaaacaacaagcatcagcaataaaatagaacaaatgacaaagaaaata 365  Q
    |||||||||| ||||  ||||||||||||||||||||||||||    ||||||||| |||||||||||  || |||||||||||||| |||||| |||||    
T  55465035 tctaaattgcagtttgaaatttgaataatcaactcattcaccc----attaacaaataacaagcatcattaacaaaatagaacaaataacaaaggaaata 55465130  T
Q  366 acatataagtagaa 379  Q
    ||||| || |||||    
T  55465131 acatagaattagaa 55465144  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 43301704 - 43301745
Alignment:
Q  211 caaacaaaaagaagaatcaacaattctgaattagggtttggg 252  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  43301704 caaacaaagagaagaatcaacaattctaaattagggtttggg 43301745  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 352
Target Start/End: Complemental strand, 31986214 - 31986109
Alignment:
Q  248 ttggggataattaacaattctaaattgcggtttagaatttgaataatcaactcattcacccattaattaacaaacaac-aagcatcagcaataaaataga 346  Q
    ||||||||||| ||||||||||||||| |||||  ||||||||||||||||||||| |  |||  ||||||||| ||| ||  | |||||||||||||||    
T  31986214 ttggggataatcaacaattctaaattgtggtttgaaatttgaataatcaactcattgattcatccattaacaaataacaaataagcagcaataaaataga 31986115  T
Q  347 acaaat 352  Q
    ||||||    
T  31986114 acaaat 31986109  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 43585504 - 43585452
Alignment:
Q  251 gggataattaacaattctaaattgcggtttagaatttgaataatcaactcatt 303  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  43585504 gggataatcaacaattctaaattgtggtttggaatttgaataatcaactcatt 43585452  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 53707547 - 53707496
Alignment:
Q  252 ggataattaacaattctaaattgcggtttagaatttgaataatcaactcatt 303  Q
    ||||||| ||||||||||||||| |||||  |||||||||||||||||||||    
T  53707547 ggataatcaacaattctaaattgtggtttgaaatttgaataatcaactcatt 53707496  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 22541448 - 22541396
Alignment:
Q  251 gggataattaacaattctaaattgcggtttagaatttgaataatcaactcatt 303  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  22541448 gggataatcaacaattctaaattgtggtttggaatttgaataatcaactcatt 22541396  T

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Target: scaffold0170 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 8062 - 7950
Alignment:
Q  251 gggataattaacaattctaaattgcggtttagaatttgaataatcaactcattcacccattaattaacaaacaacaagcatcagcaataaaatagaacaa 350  Q
    |||||||| ||||||| |||||||| |||| |||||| ||||||||||||||| |  ||   |||||||| || |||   ||||||| ||||||||| ||    
T  8062 gggataatcaacaattataaattgcagtttggaatttaaataatcaactcattgattcacccattaacaagcatcaacattcagcaacaaaatagaaaaa 7963  T
Q  351 atgacaaagaaaa 363  Q
    || ||||||||||    
T  7962 ataacaaagaaaa 7950  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 20623904 - 20623863
Alignment:
Q  211 caaacaaaaagaagaatcaacaattctgaattagggtttggg 252  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  20623904 caaacaaagagaagaatcaacaattctaaattagggtttggg 20623863  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 141728 - 141678
Alignment:
Q  253 gataattaacaattctaaattgcggtttagaatttgaataatcaactcatt 303  Q
    |||||| ||||||| |||||||| |||| |||||| |||||||||||||||    
T  141728 gataatcaacaattataaattgcagttttgaatttaaataatcaactcatt 141678  T

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Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 141784 - 141743
Alignment:
Q  211 caaacaaaaagaagaatcaacaattctgaattagggtttggg 252  Q
    |||||||| |||||||||||||||||| |||||| |||||||    
T  141784 caaacaaagagaagaatcaacaattctaaattagagtttggg 141743  T

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