View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_23 (Length: 368)
Name: NF9016_low_23
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 3592401 - 3592751
Alignment:
| Q |
1 |
ttttgtcatgacacctacaccgtgtttcttaaagaaatcctgcacgaaagcaagtacttttaatcacacatttgtccttatcaaccccgcaatacatgag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592401 |
ttttgtcatgacacctacaccgtgtttcttaaagaaatcctgcacgaaagcaagtacttttaatcacacatttgtccttatcaaccccgcaatacatgag |
3592500 |
T |
|
| Q |
101 |
gaagaagacaagagatgtgtaatcaacagctaattcctaggagaacttacggatacatgtttacagtcttcaaacagtaaacaatgagcgcaaggatggt |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592501 |
aaagaagacaagagatgtgtaatcaacagccaattcctaggagaacttacggatacatgtttacagtcttcaaacagtaaacaatgagcgcaaggatggt |
3592600 |
T |
|
| Q |
201 |
caaggtcaaccgcttgagaaacatcaataatatacaagtgaccctggtaagtaaagaatatgtaagcaaacaatttacagagacatttagtcactaaaaa |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592601 |
caatgtcaaccgcttgagaaacatcaataatatacaagtgaccctggtaagtaaagaatatgtaagcaaacaatttacagagacatttagtcactaaaaa |
3592700 |
T |
|
| Q |
301 |
tataacacccaaaggagtattcacctcataataaagtatattatattcact |
351 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592701 |
tataacacccaaaggagtattcacctcataataaagtatattatattcact |
3592751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 3 - 351
Target Start/End: Complemental strand, 35717262 - 35716912
Alignment:
| Q |
3 |
ttgtcatgacacctacaccgtgtttcttaaagaaatcctgcacg-aaagcaagtacttttaatcacaca-tttgtccttatcaaccccgcaatacatgag |
100 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| || | ||| ||||||||| ||||||| ||| | ||||| | ||| ||| ||||||| |
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|
| T |
35717262 |
ttgtcatgacacctacaccatgttttttaaagaaatcctacaagtaaaacaagtactt--aatcacattcttttttcttattagccctacaacacatgag |
35717165 |
T |
|
| Q |
101 |
gaagaagacaagagatgtgtaatcaacagctaattcctaggagaacttacggatacatgtttacagtcttcaaacagtaaacaatgagcgcaaggatggt |
200 |
Q |
| |
|
||||| |||||||||| |||||| ||||||| | |||||||| ||||||||||||||| ||||||||||| ||| ||| | |||| |||||||| |
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|
| T |
35717164 |
gaagaggacaagagatatgtaatttacagctagtgcctaggagtacttacggatacatgaatacagtcttcacgcagaaaatcaagagcatgaggatggt |
35717065 |
T |
|
| Q |
201 |
caaggtcaaccgcttgagaaacatcaataatatacaagtgaccctggtaagtaaagaatatgtaagcaaacaatt--tacagagacatttagtcactaaa |
298 |
Q |
| |
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|| | ||||||||||||||||||||||||||||||||||||||||| || ||||||| | |||| |||||||| || ||||||| | ||| |||| |
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| T |
35717064 |
caggatcaaccgcttgagaaacatcaataatatacaagtgaccctgagaaataaagaacaaataagtaaacaatttatagagagacactctgtctttaaa |
35716965 |
T |
|
| Q |
299 |
a-atataacacccaaaggagtattcacctcataataaagtatattatattcact |
351 |
Q |
| |
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| ||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
35716964 |
atata-aacatccaaaggagtattcacctcataatagagtatattatattcact |
35716912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 3 - 351
Target Start/End: Original strand, 28932183 - 28932535
Alignment:
| Q |
3 |
ttgtcatgacacctacaccgtgtttcttaaagaaatcctgcacg-aaagcaagtacttttaatcacacatttgtccttatcaaccccgcaatacatgagg |
101 |
Q |
| |
|
||||||||||||||||||| || || |||||||||||||||| | ||| ||||||||| |||||| ||| | ||||| | |||| || |||||||| |
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|
| T |
28932183 |
ttgtcatgacacctacaccatgctttttaaagaaatcctgcaagtaaaacaagtacttaaaatcactttttttttcttattagccccccac-acatgagg |
28932281 |
T |
|
| Q |
102 |
aagaagacaagagatgtgtaatcaacagctaattcctagga--gaacttacggatacatgtttacagtcttcaaacagtaaacaatgagcgcaaggatgg |
199 |
Q |
| |
|
|||| |||||||||| ||| || |||| || | ||| || |||||||||||||| || |||||||||||| ||| || | ||| ||||||| |
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|
| T |
28932282 |
aagatgacaagagatatgtgatttacagatagtgcctcgggaggaacttacggatacgtgaatacagtcttcaatcagaaactcaaaagcaagaggatgg |
28932381 |
T |
|
| Q |
200 |
tcaaggtcaaccgcttgagaaacatcaataatatacaagtgaccctggtaagtaaagaatatgtaagcaaacaa--tttacagagacatttagtcactaa |
297 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| ||| | ||||||| |||| |||| | | || |||||||||| |||||||| |
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| T |
28932382 |
tcaaggtcaaccccttgagaaacatcaataatatataagtgaccctgataaatgaagaataaataagtaaactatgtatagagagacatttcgtcactaa |
28932481 |
T |
|
| Q |
298 |
aa-atataacacccaaaggagtattcacctcataataaagtatattatattcact |
351 |
Q |
| |
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|| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
28932482 |
aatata-aacacccaaagaagtattcacctcattataaagtatattatattcact |
28932535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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