View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_29 (Length: 334)
Name: NF9016_low_29
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 45132869 - 45133195
Alignment:
| Q |
1 |
tgtgattatgacgaaaattatatttcgcaactttaataaaattacaattctcaaacatacatatatagcatataagttgttaggtttcttgaaaaatttc |
100 |
Q |
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| T |
45132869 |
tgtgattatgacgaaaattatatttcgcaattttaatgaaattacaattctcgaacatacatatatagcatataagttgttaggtttcttgaaaaatttc |
45132968 |
T |
|
| Q |
101 |
cacaactatgagatgaattacgacattaaggtttttgcaatttttcgcgctgtcaattttggcctaaccaaatggactgg---------ccaatatctta |
191 |
Q |
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| T |
45132969 |
cacaactatgagatgaattacgacattaaggttttttcaatttttcgcgctgtcaattttggcctaaccaaatggactggccaaacggaccaatatctta |
45133068 |
T |
|
| Q |
192 |
ggctgtgcggaacttcttaatttcatgctcgaaaataaccagatcattttggcctaactcaattgacaatgcgactagaattgaggttgttttggtagca |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45133069 |
ggctgtgcggaacttcttaatttcatgctcgaaaataaccagatcattttggcctaactcaattgacaatgcgactagaattgaggttgttttggtcgca |
45133168 |
T |
|
| Q |
292 |
tttaattgcgactaaggaccacattac |
318 |
Q |
| |
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||||||| ||||||||||||||||||| |
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| T |
45133169 |
tttaattacgactaaggaccacattac |
45133195 |
T |
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