View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_31 (Length: 281)
Name: NF9016_low_31
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 42215214 - 42214960
Alignment:
| Q |
19 |
atacctgacaactgattaacactcagttgaagtccttgcagatttgatagctttccaaaactgattggtatgctacctgtgagaagattttctgacaaat |
118 |
Q |
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| T |
42215214 |
atacctgacaactgattaacactcagttgaagtccttgcagatttgatagctttccaaaactgattggtatgctacctgtgagaagattttctgacaaat |
42215115 |
T |
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| Q |
119 |
ctatctcactgagctctctgcagtttccaagctcttctggaattgctcctaccatattgttttgccataaaagtagactctgaagctttctgagctcacc |
218 |
Q |
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| T |
42215114 |
ctatctcactgagctctctgcagtttccaagctcttctggaattgctcctaccatattgttttgccataaaagtagactctgaagctttctgagctcacc |
42215015 |
T |
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| Q |
219 |
aatttgaggtggaattgaaccagaaattgagttctgatacaaacacaggttctgc |
273 |
Q |
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| T |
42215014 |
aatttgaggtggaattgaaccagaaattgagttctgatacaaatacagattctgc |
42214960 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 261
Target Start/End: Complemental strand, 24156569 - 24156393
Alignment:
| Q |
85 |
ggtatgctacctgtgagaagattttctgacaaatctatctcactgagctctctgcagtttccaagctcttctggaattgctcctaccatattgttttgcc |
184 |
Q |
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| T |
24156569 |
ggtatgctacctgttaaaagattttctgaaaaatctataagttgaatctctctgcatcttccaatctcttctggaatagtacctactaaattgttctgcc |
24156470 |
T |
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| Q |
185 |
ataaaagtagactctgaagctttctgagctcaccaatttgaggtggaattgaaccagaaattgagttctgatacaaa |
261 |
Q |
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| T |
24156469 |
atagaagtaaactcttcagcttgttaaggtttccaatttgagctggaattgaacctgagagagagttctgatacaaa |
24156393 |
T |
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