View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_34 (Length: 241)
Name: NF9016_low_34
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 41453486 - 41453688
Alignment:
| Q |
20 |
caataacatgaaaccaataaaaataaaacacaccaagctctaataaagaatggaaaccttcttcttctttgatctgaactgaagaaaaacaagaaccctt |
119 |
Q |
| |
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|||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
41453486 |
caataacatgaaacaaataaaaagaaaacacaccaagctctaaaaaagaatggaaaccttctttttctttgacctgaactgaagaaaaacaaaaaccctt |
41453585 |
T |
|
| Q |
120 |
tgaagaaacaaacacaaacaacacaccaagcaactgtttttaaagctaaatcaaaaagagtaataaccttttcttctgaccaaccactagtataccagta |
219 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
41453586 |
tgtagaaacaaacacaaacaacacaccaagcaactgtttttaaagctaaatcaaaaagagtaacaaccttttcttctgaccaaccactagtataccaata |
41453685 |
T |
|
| Q |
220 |
aaa |
222 |
Q |
| |
|
||| |
|
|
| T |
41453686 |
aaa |
41453688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 41440319 - 41440525
Alignment:
| Q |
16 |
agagcaataacatgaaaccaataaaaataaaacacaccaagctctaataaagaatggaaaccttcttcttctttgatctgaactgaagaaaaacaagaac |
115 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41440319 |
agagcaataacatgaaacaaataaaaataaaacacaccaagctctaataaagaatggaaaccttcttcttctttgatctgaactgaagaaaaacaagaac |
41440418 |
T |
|
| Q |
116 |
cctttgaagaaacaaacacaaacaacacaccaagcaactgtttttaaagctaaatcaaaaagagtaataaccttttcttctgaccaaccactagtatacc |
215 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||||| | ||||| |
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| T |
41440419 |
cctttgtggaaacaaacacaaacaacacaccaagcaactgtttttaatactaaatctaaaattgtaacaaccttttcttctgaccaaccacttgcatacc |
41440518 |
T |
|
| Q |
216 |
agtaaaa |
222 |
Q |
| |
|
||||||| |
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|
| T |
41440519 |
agtaaaa |
41440525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 14242465 - 14242667
Alignment:
| Q |
20 |
caataacatgaaaccaataaaaataaaacacaccaagctctaataaagaatggaaaccttcttcttctttgatctgaactgaagaaaaacaagaaccctt |
119 |
Q |
| |
|
|||||||||||||| || | | | ||||||||||||||||||| ||||||| |||| ||||| |||||||| |||| || |||||||| |||||||||| |
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|
| T |
14242465 |
caataacatgaaacaaaaagatagaaaacacaccaagctctaaagaagaatgaaaactttctttttctttgacctgagctcaagaaaaagaagaaccctt |
14242564 |
T |
|
| Q |
120 |
tgaagaaacaaacacaaacaacacaccaagcaactgtttttaaagctaaatcaaaaagagtaataaccttttcttctgaccaaccactagtataccagta |
219 |
Q |
| |
|
|| |||||||||| |||||||| |||||| ||||||||| | ||||||||||||||| |||| ||| ||||| |||||||||||| | |||||||||| |
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|
| T |
14242565 |
tgtggaaacaaacaaaaacaacaaaccaagtaactgttttgagagctaaatcaaaaagggtaacaactttttcatctgaccaaccatttctataccagta |
14242664 |
T |
|
| Q |
220 |
aaa |
222 |
Q |
| |
|
||| |
|
|
| T |
14242665 |
aaa |
14242667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 14370856 - 14370654
Alignment:
| Q |
20 |
caataacatgaaaccaataaaaataaaacacaccaagctctaataaagaatggaaaccttcttcttctttgatctgaactgaagaaaaacaagaaccctt |
119 |
Q |
| |
|
|||||||||||||| || | | | ||||||||||||||||||| ||||||| |||| ||||| |||||||| || |||||||||||||||||||||||| |
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|
| T |
14370856 |
caataacatgaaacaaaaagatagaaaacacaccaagctctaaagaagaatgaaaactttctttttctttgacctaaactgaagaaaaacaagaaccctt |
14370757 |
T |
|
| Q |
120 |
tgaagaaacaaacacaaacaacacaccaagcaactgtttttaaagctaaatcaaaaagagtaataaccttttcttctgaccaaccactagtataccagta |
219 |
Q |
| |
|
| |||||||||| ||| ||| |||||| ||||||||| | ||||||||||||||| |||| | | ||||||||||||||| |||| ||||||||||| |
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|
| T |
14370756 |
tctggaaacaaacaaaaagaacgaaccaagtaactgttttgagagctaaatcaaaaagggtaacagctttttcttctgaccaatcacttgtataccagta |
14370657 |
T |
|
| Q |
220 |
aaa |
222 |
Q |
| |
|
||| |
|
|
| T |
14370656 |
aaa |
14370654 |
T |
|
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