View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9016_low_38 (Length: 220)

Name: NF9016_low_38
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9016_low_38
NF9016_low_38
[»] chr4 (11 HSPs)
chr4 (1-178)||(22186054-22186217)
chr4 (182-220)||(3672274-3672312)
chr4 (182-220)||(28093249-28093287)
chr4 (182-220)||(49243815-49243853)
chr4 (182-220)||(7217765-7217803)
chr4 (182-220)||(21391108-21391146)
chr4 (182-220)||(46192359-46192397)
chr4 (182-219)||(6112630-6112667)
chr4 (182-219)||(35544912-35544949)
chr4 (182-215)||(44275706-44275739)
chr4 (182-219)||(45829411-45829448)
[»] chr3 (11 HSPs)
chr3 (181-220)||(22894679-22894718)
chr3 (182-220)||(29460660-29460698)
chr3 (182-220)||(29471512-29471550)
chr3 (182-220)||(34750051-34750089)
chr3 (182-220)||(38231293-38231331)
chr3 (182-219)||(36370492-36370529)
chr3 (182-219)||(43999989-44000026)
chr3 (182-217)||(51339937-51339972)
chr3 (182-220)||(21559561-21559599)
chr3 (182-220)||(30735648-30735686)
chr3 (182-219)||(36749406-36749443)
[»] chr7 (13 HSPs)
chr7 (182-220)||(26972356-26972394)
chr7 (182-218)||(42221118-42221154)
chr7 (182-220)||(34108426-34108464)
chr7 (182-220)||(7700036-7700074)
chr7 (182-220)||(7700234-7700272)
chr7 (182-220)||(7700432-7700470)
chr7 (182-220)||(7700630-7700668)
chr7 (182-220)||(28307648-28307686)
chr7 (182-220)||(36346717-36346755)
chr7 (186-219)||(21807476-21807509)
chr7 (187-220)||(42950156-42950189)
chr7 (182-218)||(30887700-30887736)
chr7 (188-220)||(31148296-31148328)
[»] chr6 (5 HSPs)
chr6 (182-220)||(3987058-3987096)
chr6 (182-220)||(3118200-3118238)
chr6 (182-220)||(14022934-14022972)
chr6 (182-211)||(7674598-7674627)
chr6 (182-215)||(15345815-15345848)
[»] chr2 (7 HSPs)
chr2 (182-220)||(33732569-33732607)
chr2 (182-220)||(36315561-36315599)
chr2 (185-220)||(44958116-44958151)
chr2 (182-220)||(16089822-16089860)
chr2 (182-220)||(3831048-3831086)
chr2 (182-220)||(14572995-14573033)
chr2 (182-220)||(37914389-37914427)
[»] chr8 (6 HSPs)
chr8 (185-220)||(12665347-12665382)
chr8 (182-220)||(30432339-30432377)
chr8 (182-220)||(36189216-36189254)
chr8 (182-220)||(42162598-42162636)
chr8 (182-215)||(31318805-31318838)
chr8 (183-220)||(44081781-44081818)
[»] chr1 (4 HSPs)
chr1 (181-220)||(34307291-34307330)
chr1 (182-220)||(39250016-39250054)
chr1 (182-219)||(46901889-46901926)
chr1 (187-220)||(10146971-10147004)
[»] scaffold0062 (1 HSPs)
scaffold0062 (186-220)||(6722-6756)
[»] scaffold0043 (1 HSPs)
scaffold0043 (186-220)||(87316-87350)
[»] chr5 (8 HSPs)
chr5 (182-220)||(13347128-13347166)
chr5 (182-220)||(39370927-39370965)
chr5 (182-219)||(19596221-19596258)
chr5 (181-218)||(33404591-33404628)
chr5 (182-218)||(40888097-40888133)
chr5 (182-220)||(1815769-1815807)
chr5 (182-220)||(2237276-2237314)
chr5 (182-216)||(17225319-17225353)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 22186054 - 22186217
Alignment:
Q  1 aaatactccatagagcaatagcgcccacaaagttggctccgacaacagaactcacaaaggccaacctaaaacaatagacaagaaaagaaaacccctacca 100  Q
    |||||||||||||||||||||| |||||||||||||||||||              | ||||||||||||||||||||||||||||||||||||||||||    
T  22186054 aaatactccatagagcaatagcacccacaaagttggctccga--------------atggccaacctaaaacaatagacaagaaaagaaaacccctacca 22186139  T
Q  101 caccaccaaatacccatcacaaggaacgattaaccaagcctacaccaaaaagagaaccaggtaataaacccctataga 178  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  22186140 caccaccaaatacccatcacaaggaacgattaactaagtctacaccaaaaagagaaccaggtaataaacccctataga 22186217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 3672274 - 3672312
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3672274 gagctcttatacatgaaccaccttaggtggcatacaccc 3672312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 28093287 - 28093249
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28093287 gagctcttatacatgaaccaccttaggtggcatacaccc 28093249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 49243815 - 49243853
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49243815 gagctcttatacatgaaccaccttaggtggcatacaccc 49243853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 7217765 - 7217803
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  7217765 gagctcttatacataaaccaccttaggtggcatacaccc 7217803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 21391146 - 21391108
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  21391146 gagctcttatacatgaaccaccttagatggcatacaccc 21391108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 46192359 - 46192397
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  46192359 gagctcttatacatgaatcaccttaggtggcatacaccc 46192397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 6112630 - 6112667
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacacc 219  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6112630 gagctcttatacatgaaccaccttagatggcatacacc 6112667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 35544912 - 35544949
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacacc 219  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  35544912 gagctcttatacatgaaccatcttaggtggtatacacc 35544949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 44275706 - 44275739
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcata 215  Q
    |||||||||||||| |||||||||||||||||||    
T  44275706 gagctcttatacataaaccaccttaggtggcata 44275739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 45829448 - 45829411
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacacc 219  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  45829448 gagctcttatacatgaaccactttaggtgacatacacc 45829411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 22894679 - 22894718
Alignment:
Q  181 ggagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22894679 ggagctcttatacatgaaccaccttaggtggcatacaccc 22894718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 29460660 - 29460698
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29460660 gagctcttatacatgaaccaccttaggtggcatacaccc 29460698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 29471512 - 29471550
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29471512 gagctcttatacatgaaccaccttaggtggcatacaccc 29471550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 34750089 - 34750051
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34750089 gagctcttatacatgaaccaccttaggtggcatacaccc 34750051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 38231293 - 38231331
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38231293 gagctcttatacatgaaccaccttaggtggcatacaccc 38231331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 36370529 - 36370492
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacacc 219  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  36370529 gagctcttatacatgaaccaccttaggtgtcatacacc 36370492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 43999989 - 44000026
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacacc 219  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  43999989 gagctcttatacatgaaccaccttaggtgtcatacacc 44000026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 51339972 - 51339937
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcataca 217  Q
    |||||||||||||| |||||||||||||||||||||    
T  51339972 gagctcttatacataaaccaccttaggtggcataca 51339937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 21559561 - 21559599
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  21559561 gagctcttatacataaaccatcttaggtggcatacaccc 21559599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 30735686 - 30735648
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  30735686 gagctcttatatatgaaccaccttagatggcatacaccc 30735648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 36749406 - 36749443
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacacc 219  Q
    |||||||||||||||||||||||||| || ||||||||    
T  36749406 gagctcttatacatgaaccaccttagatgtcatacacc 36749443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 26972394 - 26972356
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26972394 gagctcttatacatgaaccaccttaggtggcatacaccc 26972356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 42221154 - 42221118
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacac 218  Q
    |||||||||||||||||||||||||||||||||||||    
T  42221154 gagctcttatacatgaaccaccttaggtggcatacac 42221118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 34108426 - 34108464
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  34108426 gagctcttatacatgaaccaccttaggtgacatacaccc 34108464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 7700074 - 7700036
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  7700074 gagctcttatacataaaccaccttagatggcatacaccc 7700036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 7700272 - 7700234
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  7700272 gagctcttatacataaaccaccttagatggcatacaccc 7700234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 7700470 - 7700432
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  7700470 gagctcttatacataaaccaccttagatggcatacaccc 7700432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 7700668 - 7700630
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  7700668 gagctcttatacataaaccaccttagatggcatacaccc 7700630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 28307686 - 28307648
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  28307686 gagctcttatacataaactaccttaggtggcatacaccc 28307648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 36346755 - 36346717
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  36346755 gagctcttatacataaaccatcttaggtggcatacaccc 36346717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 21807509 - 21807476
Alignment:
Q  186 tcttatacatgaaccaccttaggtggcatacacc 219  Q
    |||||||||||||||||||||| |||||||||||    
T  21807509 tcttatacatgaaccaccttagatggcatacacc 21807476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 42950189 - 42950156
Alignment:
Q  187 cttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||| |||||||||||||||||||||||||||||    
T  42950189 cttagacatgaaccaccttaggtggcatacaccc 42950156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 30887700 - 30887736
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacac 218  Q
    |||||||||||||||||| | ||||||||||||||||    
T  30887700 gagctcttatacatgaacaatcttaggtggcatacac 30887736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 31148296 - 31148328
Alignment:
Q  188 ttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||| ||||||||||||||||||    
T  31148296 ttatacatgaaccatcttaggtggcatacaccc 31148328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 3987096 - 3987058
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3987096 gagctcttatacatgaaccaccttaggtggcatacaccc 3987058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 3118238 - 3118200
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  3118238 gagctcttatatatgaaccaccttaggtggcatacaccc 3118200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 14022934 - 14022972
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  14022934 gagctattatacataaaccaccttaggtggcatacaccc 14022972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 7674627 - 7674598
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtgg 211  Q
    ||||||||||||||||||||||||||||||    
T  7674627 gagctcttatacatgaaccaccttaggtgg 7674598  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 15345848 - 15345815
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcata 215  Q
    |||||||||||||| |||||||||||||||||||    
T  15345848 gagctcttatacatcaaccaccttaggtggcata 15345815  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 33732569 - 33732607
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33732569 gagctcttatacatgaaccaccttaggtggcatacaccc 33732607  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 36315561 - 36315599
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36315561 gagctcttatacatgaaccaccttaggtggcatacaccc 36315599  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 44958116 - 44958151
Alignment:
Q  185 ctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  44958116 ctcttatacatgaaccaccttaggtggcatacaccc 44958151  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 16089822 - 16089860
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  16089822 gagctcttatacatgaaccaccttaagtggcatacaccc 16089860  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 3831086 - 3831048
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  3831086 gagcacttatacatgaaccaccttaggtgacatacaccc 3831048  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 14572995 - 14573033
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  14572995 gagctcttatacataaaccaccttaggtggcatccaccc 14573033  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 37914427 - 37914389
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  37914427 gagcttttatacataaaccaccttaggtggcatacaccc 37914389  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 12665347 - 12665382
Alignment:
Q  185 ctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  12665347 ctcttatacatgaaccaccttaggtggcatacaccc 12665382  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 30432339 - 30432377
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  30432339 gagctcttatacatgaaccaccttagatggcatacaccc 30432377  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 36189216 - 36189254
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36189216 gagctcttatacatgaaccatcttaggtggcatacaccc 36189254  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 42162598 - 42162636
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  42162598 gagctcttatacatgaaccaccttaggtgtcatacaccc 42162636  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 31318805 - 31318838
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcata 215  Q
    ||||||||||||||||||||||||||||||||||    
T  31318805 gagctcttatacatgaaccaccttaggtggcata 31318838  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 44081781 - 44081818
Alignment:
Q  183 agctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  44081781 agctcttatacatgaaccatcttaggtggcatacaccc 44081818  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 34307330 - 34307291
Alignment:
Q  181 ggagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  34307330 ggagctcttatacataaaccaccttaggtggcatacaccc 34307291  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 39250054 - 39250016
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  39250054 gagctcttatacatgaaccatcttaggtggcatacaccc 39250016  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 46901926 - 46901889
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacacc 219  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  46901926 gagctcttatacatgaaccaccttaggtgacatacacc 46901889  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 10146971 - 10147004
Alignment:
Q  187 cttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||| |||||||||||||||||||||||    
T  10146971 cttatacatggaccaccttaggtggcatacaccc 10147004  T

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Target: scaffold0062 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 6722 - 6756
Alignment:
Q  186 tcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||    
T  6722 tcttatacatgaaccaccttaggtggcatacaccc 6756  T

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Target: scaffold0043 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 87350 - 87316
Alignment:
Q  186 tcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||||||||||||    
T  87350 tcttatacatgaaccaccttaggtggcatacaccc 87316  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 13347128 - 13347166
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13347128 gagcttttatacatgaaccaccttaggtggcatacaccc 13347166  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 39370927 - 39370965
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  39370927 gagctcttatacatgaaccaccttagatggcatacaccc 39370965  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 19596258 - 19596221
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacacc 219  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  19596258 gagctgttatacatgaaccaccttaggtggcatacacc 19596221  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 33404628 - 33404591
Alignment:
Q  181 ggagctcttatacatgaaccaccttaggtggcatacac 218  Q
    |||||||||||||||||||||||||||||| |||||||    
T  33404628 ggagctcttatacatgaaccaccttaggtgccatacac 33404591  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 40888133 - 40888097
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacac 218  Q
    |||||||||||||| ||||||||||||||||||||||    
T  40888133 gagctcttatacataaaccaccttaggtggcatacac 40888097  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 1815807 - 1815769
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  1815807 gagctcttatacatgaaccatcttaggtgacatacaccc 1815769  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 2237276 - 2237314
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatacaccc 220  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  2237276 gagcttttatacatgaaccaccttaggtgacatacaccc 2237314  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 17225319 - 17225353
Alignment:
Q  182 gagctcttatacatgaaccaccttaggtggcatac 216  Q
    ||||||||||||||||||||| |||||||||||||    
T  17225319 gagctcttatacatgaaccactttaggtggcatac 17225353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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