View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_42 (Length: 208)
Name: NF9016_low_42
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 39093437 - 39093264
Alignment:
| Q |
17 |
ataaactggaggaatgttttctttgttgtctccaatggacatcgttgaataagaatctcagcaacacgataagattttcggagaaaagaaagaggaattc |
116 |
Q |
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| T |
39093437 |
ataaactggaggaatgttttctttgttgtctccaatggacatcgttgaataagaatctcagcaacacgatgagattttcggagaaaagaaagaggaattc |
39093338 |
T |
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| Q |
117 |
aatttgagatggaagaaggtgttgtgaattggggtatttaaacatggttgatgtgaaaatgtttttactttttg |
190 |
Q |
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| T |
39093337 |
aatttgagatggaagaaggtgttgtgaattggggtatttaaacatggttgatgtgaaaatgtttttactttttg |
39093264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 39231885 - 39231835
Alignment:
| Q |
77 |
gcaacacgataagattttcggagaaaagaaagaggaattcaatttgagatg |
127 |
Q |
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| T |
39231885 |
gcaacaagatgagattttcggagaaaagaatgaggaattcaatttgagatg |
39231835 |
T |
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