View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_5 (Length: 654)
Name: NF9016_low_5
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 9778606 - 9778070
Alignment:
| Q |
1 |
actaaatcaaatttgggttctctgatagctccatcagaacttacatccctccaccataaattgatgcctgggaccggccgactataagaatatacatttg |
100 |
Q |
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| T |
9778606 |
actaaatcaaatttgggttctctgatagctccagcagaacttacatccctccaccataaattgatgcctgggaccagccgactataagaatatacatttg |
9778507 |
T |
|
| Q |
101 |
gactttctcaaaaccacccttccataccttacaaccaatacttttgtccattttgaatcaccctccattagaagcctccacctctatttggcaagaaatg |
200 |
Q |
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| T |
9778506 |
gactttctcaaa-ccacccttccataccttacaaccaatacttttctccattttcaatcaccctccattagaagcctccacctctatttggcaagaaatg |
9778408 |
T |
|
| Q |
201 |
tcaagttagagtctaagttcttaatttcacccttat--cccctctcctcctttaagttcttttagttaacttccaacataggtgtcattttgtggacaaa |
298 |
Q |
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| T |
9778407 |
tcaagttagagtctaagttctt----tcacccttatatcccctctcctcctttaagttcttttagttaacttccaacatagctgtcattttgtggacaaa |
9778312 |
T |
|
| Q |
299 |
aaattacaaatggttcattctgttaaaattgtcccaaattagattgtgatattgacaaatttataaccttattcttccatgtcaataaggtaaaagataa |
398 |
Q |
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| T |
9778311 |
aaattacaaatggttcattctgttaaaattgtcccaaattagattgtgatattgacaaatttataaccttattcttccatgtcaataaggtaaaagataa |
9778212 |
T |
|
| Q |
399 |
agatgtgttattttaataaaatgtgctaacatggtacaaatattgtgactaaaatgatctatctaaaaatgaaagaaacatagttaaataact------- |
491 |
Q |
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| T |
9778211 |
agatgtgt------------------taacatggtacaaatattgtgactaaaatgatctatctaaaaatgaaagaaacatagttaaataacttaaagaa |
9778130 |
T |
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| Q |
492 |
-tccaaaatgaaagttgtctaaattatatgcttctccatataggattcaaacaagggaaa |
550 |
Q |
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| T |
9778129 |
ctccaaaatgtaagttgtctaaattatatgcttctccatataggattcaaacaagggaaa |
9778070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 302 - 396
Target Start/End: Complemental strand, 9788433 - 9788336
Alignment:
| Q |
302 |
ttacaaatggttcattctgttaaaattgtcccaaattagattgtgatattgacaaatttataaccttatt---cttccatgtcaataaggtaaaagat |
396 |
Q |
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| T |
9788433 |
ttacaaatggctcattctgttaaaaatgtcccaaattagattgtgatactgacaaatgtctaaacttattatgctgctatgtcaataacgtaaaagat |
9788336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 543
Target Start/End: Complemental strand, 9775311 - 9775276
Alignment:
| Q |
508 |
tctaaattatatgcttctccatataggattcaaaca |
543 |
Q |
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| T |
9775311 |
tctaaattatatgcttctccatatagggttcaaaca |
9775276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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