View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_6 (Length: 596)
Name: NF9016_low_6
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 596
Target Start/End: Complemental strand, 56392662 - 56392084
Alignment:
| Q |
18 |
tacaagataaaaataaaaaggaaatttggctatcgcatagacgattaggacatccttcttttagttatctaaagaaattatttccatcgttatttcataa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56392662 |
tacaagataaaaataaaaaggaaatttggctatggcatagacgatcaggacatctttcttttagttatctaaagaaattatttccatcgttatttcataa |
56392563 |
T |
|
| Q |
118 |
atgcaatatttcagattttctttgtgaaacttgtgtaatggcaaaaagtcatcgtgctgtttatcctttaagcaatnnnnnnnnnccgattttccttttt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | ||||||||||||| |
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| T |
56392562 |
atgcaatatttcagattttctttgtgaaacttgtgtaatggcaaaaagccatcgtgctgtttatcctttaaccaataaaaaaa--ctgattttccttttt |
56392465 |
T |
|
| Q |
218 |
tgttagtacatactgatgtttggggccctgccccacaatctacgcataatgggaaaaaatggtttatcagttttgttgatgattgtactcgagtaacttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
56392464 |
cgttagtacatactgatgtttggggccctgccccacaatctacgcataatgggaaaaaatggtttatcagttttgttgatgattgtactcgggtaacttg |
56392365 |
T |
|
| Q |
318 |
ggtatatttgttaaaacataaaagtgatgtgtatgatgtgtttcgctcctttcatcaaatgatagttacacaatttaacacatgtataaaagtgattaga |
417 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56392364 |
ggtatatttgttaaaacataaaagtgatgtgtatgatgtgttttgctcctttcatcaaatgatagttacacaatttaacacatgtataaaagtgattaga |
56392265 |
T |
|
| Q |
418 |
tctgacaatggaggggaatattttaaaaaggatttaatggagttcatgaactctaaaggcattttgcatcaaactacatgtccttactcaccccaacaaa |
517 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56392264 |
tctgacaatggaagggaatattttaaaaaggaattaatggagttcatgaactctaaaggcattttgcatcaaactacatgtccttactcaccccaacaaa |
56392165 |
T |
|
| Q |
518 |
atggagtggctgagaggaaaaatag-cacatattagaagtgacacgatcactcttaatagatggtgatg-tccatctcatt |
596 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
56392164 |
atggagtggccgagaggaaaaatagacacatattagaagtgacacgatcactcttaatagatggtaatgttccatctcatt |
56392084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 596
Target Start/End: Complemental strand, 27516903 - 27516325
Alignment:
| Q |
18 |
tacaagataaaaataaaaaggaaatttggctatcgcatagacgattaggacatccttcttttagttatctaaagaaattatttccatcgttatttcataa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27516903 |
tacaagataaaaataaaaaggaaatttggctatggcatagacgattagggcatccttcttttagttatctaaataaattatttccatcgttatttcataa |
27516804 |
T |
|
| Q |
118 |
atgcaatatttcagattttctttgtgaaacttgtgtaatggcaaaaagtcatcgtgctgtttatcctttaagcaatnnnnnnnnnccgattttccttttt |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| | ||||||||||||| |
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| T |
27516803 |
atgcaatatttcagattttctttgtgaaacttgtgtaatggcaaaaagccatcgttttgtttatcctttaatcaataaaaaaa--ctgattttccttttt |
27516706 |
T |
|
| Q |
218 |
tgttagtacatactgatgtttggggccctgccccacaatctacgcataatgggaaaaaatggtttatcagttttgttgatgattgtactcgagtaacttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27516705 |
cgttagtacatactgatgtttggggccctgccccacaatctacgcataatgggaaaaaatggtttatcagttttgttgatgattgtactcgggtaacttg |
27516606 |
T |
|
| Q |
318 |
ggtatatttgttaaaacataaaagtgatgtgtatgatgtgtttcgctcctttcatcaaatgatagttacacaatttaacacatgtataaaagtgattaga |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516605 |
ggtatatttgttaaaacataaaagtgatgtgtatgatgtgttttgctcctttcatcaaatgatagttacacaatttaacacatgtataaaagtgattaga |
27516506 |
T |
|
| Q |
418 |
tctgacaatggaggggaatattttaaaaaggatttaatggagttcatgaactctaaaggcattttgcatcaaactacatgtccttactcaccccaacaaa |
517 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516505 |
tctgacaatggaagggaatattttaaaaaggaattaatggagttcatgaactctaaaggcattttgcatcaaactacatgtccttactcaccccaacaaa |
27516406 |
T |
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| Q |
518 |
atggagtggctgagaggaaaaatag-cacatattagaagtgacacgatcactcttaatagatggtgatg-tccatctcatt |
596 |
Q |
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| T |
27516405 |
atggagtggctgagaggaaaaatagacacatattagaagtgacacgatcactcttaatagatggtaatgttccatctcatt |
27516325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 542
Target Start/End: Complemental strand, 52684336 - 52684278
Alignment:
| Q |
484 |
catcaaactacatgtccttactcaccccaacaaaatggagtggctgagaggaaaaatag |
542 |
Q |
| |
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||||||| ||||||| | |||||||||||||||||||| | || |||||||||||||| |
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| T |
52684336 |
catcaaagtacatgtgttaactcaccccaacaaaatggaatagcggagaggaaaaatag |
52684278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 87 - 581
Target Start/End: Complemental strand, 40456564 - 40456080
Alignment:
| Q |
87 |
taaagaaattatttccatcgttatttcataaatgcaatatttcagattttctttgtgaaacttgtgtaatggcaaaaagtcatcgtgctgtttatccttt |
186 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| || |
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| T |
40456564 |
taaagaaattgtttccatcgttatttcataaatgcaatatttcagattttctttgtgaaacttgtgta-tggcaaaaagtcatcgtgttgtttttccctt |
40456466 |
T |
|
| Q |
187 |
aagcaatnnnnnnnnnccgattttccttttttgttagtacatactgatgtttggggccctgccccacaatctacgcataatggga-aaaaatggtttatc |
285 |
Q |
| |
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||||||| | | ||||||||||| |||||||| || ||||||||||||||| |||| || ||||| |||||||| | |||||||||||||| |
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| T |
40456465 |
aagcaataaaaaat--ctgtttttcctttttcattagtacacacagatgtttggggcccttccccgcagtctacacataatggaagaaaaatggtttatc |
40456368 |
T |
|
| Q |
286 |
agttttgttgatgattgtactcgagtaacttgggtatatttgttaaaacataaaagtgatgtgtatgatgtgtttcgctcctttcatcaaatgatagtta |
385 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||| || ||| |||| ||||||| | |
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| T |
40456367 |
agttttgttgatgattgtactcgggtaacttgggtatatttgcttaaacataaaagtgat---------gtgtttcgttctttttatcagatgatagaaa |
40456277 |
T |
|
| Q |
386 |
cacaatttaacacatgtataaaagtgattagatctgacaatggaggggaatattttaaaaaggatttaatggagttcatgaactctaaaggcattttgca |
485 |
Q |
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|||||||||||| ||| ||||| || |||||||| ||||||||||||||||||||||||| || |||| |||| | |||||||||||||||||||| |
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| T |
40456276 |
cacaatttaacatatgcataaaggtcattagatcagacaatggaggggaatattttaaaaccgaattaacaaagtttttaaactctaaaggcattttgca |
40456177 |
T |
|
| Q |
486 |
tcaaactacatgtccttactcaccccaacaaaatggagtggctgagaggaaaaatag-cacatattagaagtgacacgatcactcttaatagatggt |
581 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||| ||||||||||| |
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|
| T |
40456176 |
tcaaactacatgtccatattcacctcaacaaaatggagtggctgagaggaaaaatagacatttattagaggtgacaagatcactcctaatagatggt |
40456080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 40456610 - 40456571
Alignment:
| Q |
19 |
acaagataaaaataaaaaggaaatttggctatcgcataga |
58 |
Q |
| |
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|||||||||||||||||||||||||||| ||| ||||||| |
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| T |
40456610 |
acaagataaaaataaaaaggaaatttggttatggcataga |
40456571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 40089827 - 40089860
Alignment:
| Q |
140 |
tgtgaaacttgtgtaatggcaaaaagtcatcgtg |
173 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
40089827 |
tgtgaaacttgtgtaatggcaaaaagccatcgtg |
40089860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 4243387 - 4243420
Alignment:
| Q |
140 |
tgtgaaacttgtgtaatggcaaaaagtcatcgtg |
173 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| |
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| T |
4243387 |
tgtgaaacttgtgtaatggcaaaaagccatcgtg |
4243420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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