View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9016_low_9 (Length: 543)
Name: NF9016_low_9
Description: NF9016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9016_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 39 - 507
Target Start/End: Original strand, 43729151 - 43729619
Alignment:
| Q |
39 |
tggtggtcaggttgagaaagtattcaagattagtgaagaaaatggatcaaaggaggaagagttaaccaaggattaatgaggttaattcagatagagatgt |
138 |
Q |
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| T |
43729151 |
tggtggtcaggctgagaaagtattcaagattagtgaagaaaatggatcaaaggaggaagagttaaccaaggattaatgaggttaattcagatagagatgt |
43729250 |
T |
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| Q |
139 |
tgaagtggcaaaaatgtatggttagtatatatgttgaactctagtcagcttgttagattatagagcaaaagtcctgaataggaaatgatcatgattcaca |
238 |
Q |
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| T |
43729251 |
tgaagtggcaaaaatgtatggttagtatatatgttgaactctagtcagcttgttagattatagagcaaaagtcctgaataggaaatgatcatgattcaca |
43729350 |
T |
|
| Q |
239 |
ctcaaattggatagtcatatattcctttatcctgtttgttttgattagtattagtcacagatatgggtaggcaatatatatttaaaatttgcttatgtat |
338 |
Q |
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| T |
43729351 |
ctcaaattggatagtcatatattcctttatcctgtttgttttgataagtattagtcacagatatgggtaggcaatatatatttaaaatttgcttatgtat |
43729450 |
T |
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| Q |
339 |
accctttttgatagagaaatattatttaaacaaccaaaacttgccaacttatttgacaatcgaatgaaaatgcatcatttacaattctaactattgattt |
438 |
Q |
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| T |
43729451 |
accctttttgatagagaaatattatttaaacaaccaaaacttgccaacttatttgacaatcgaatgaaaatgcatcatttacaattctaactattgattt |
43729550 |
T |
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| Q |
439 |
gacttgaagagagaaaaaacaataaaaagacgaaatcttatttatatgttgttgaccaatttgtccaaa |
507 |
Q |
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| T |
43729551 |
gacttgaagagagaaaaaacaataaaaagatgaaatcgtatttatatgttgttgaccaacttgtccaaa |
43729619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 43687610 - 43687669
Alignment:
| Q |
43 |
ggtcaggttgagaaagtattcaagattagtgaagaaaatggatcaaaggaggaagagtta |
102 |
Q |
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| T |
43687610 |
ggtcaggttgagaaagtatccaaagtgagtgaagaaaatggttccaaggaggaatagtta |
43687669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 466
Target Start/End: Original strand, 4666780 - 4666892
Alignment:
| Q |
351 |
agagaaatattatttaaacaaccaaaacttgccaacttatttgacaatcgaatgaaaatgcatcatttacaattctaactattgatttgacttga--aga |
448 |
Q |
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| T |
4666780 |
agagaaatgttatttgaacaaccaaaacttgacaacgtatttgacaaccatataaaaatacaccattta------taactattgatttgacttgaggaaa |
4666873 |
T |
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| Q |
449 |
gagaaaaaac-aataaaaa |
466 |
Q |
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| T |
4666874 |
gagaaaaaactaataaaaa |
4666892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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