View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9017_high_3 (Length: 436)
Name: NF9017_high_3
Description: NF9017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9017_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 419
Target Start/End: Complemental strand, 21013398 - 21012998
Alignment:
| Q |
15 |
gaggtaaagttctgttagtacaaaggattgctcaaatttgtaacttcttgtgatgggttctctgcaacttgtatcttcctcagtagtatagttattgtat |
114 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21013398 |
gaggtaaatttctgttagtacaaaggattgctcaaatttgtaacttcttgtgatgggttctctgcaacttgtatcttcctcagta---tagttattgtat |
21013302 |
T |
|
| Q |
115 |
ttactgctgcatctttgtattttttatctgctgcattggaatctgtgtctgtgtttttcttcaattacagtctctctcgtacatagtttattaatgttgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21013301 |
ttactgctgcatctttgtattttttatctgctgcattggaatctgtgtctgtgtttttcttcaattacagtctctctcgtacatagtttattaatgttag |
21013202 |
T |
|
| Q |
215 |
tacaaagtatagtaaaatttgtttgctattattatctccttacattaatgaattgtggtaccaataacgcagggtgttgacaatgtttcaatattttttc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
21013201 |
tacaaagtatagtaaaatttgtttgctattattatctccttacattaatgaattgtggta-caataacgcagggtgttgacaatgtttcaatcttttttc |
21013103 |
T |
|
| Q |
315 |
atgttaattgattacataaccaacaaaatggaaaataatttctgggactttgttgaaaaaacatagagaagatgcctactcttaaagtagttatgggggg |
414 |
Q |
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| T |
21013102 |
atgttaattgattacataaccaacaaaatggaaaataatttctgggactttgttgaaaaaacatagagaagatgcctactcttaaagtagttatgggggg |
21013003 |
T |
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| Q |
415 |
tgcat |
419 |
Q |
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| T |
21013002 |
tgcat |
21012998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 20961955 - 20961564
Alignment:
| Q |
15 |
gaggtaaagttctgttagtacaaaggattgctcaaatttgtaacttct------tgtgatgggttctctgcaacttgtatcttcctcagtagtatagtta |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||| |
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| T |
20961955 |
gaggtaaagttctgttagtacaaaggattgctcaaatttgtaacttctgtgacttgtgataggttctctgcaacttgtatctctctcagta---tagtta |
20961859 |
T |
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| Q |
109 |
ttgtatttactgctgcatctttgtattttttatctgctgcattggaatctgtgtctgtgtttttcttcaattacagtctctctcgtacatagtttatt-a |
207 |
Q |
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|| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| | |
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| T |
20961858 |
tt--atttactgctgcatctttgtattttttatctgctacattggaatctgtgt------ttttcttcaattacagtctctc--gtacatagtttattga |
20961769 |
T |
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| Q |
208 |
atgt--tggtacaaagtatagtaaaatttgtttgctattattatctccttacattaatgaattgtggtaccaataacgcag---ggtgttgacaatgttt |
302 |
Q |
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|| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |
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| T |
20961768 |
atttaatggtac------tagtaaaatttgtttgctattattatctccttacattaatgaattgtggtaccaataatgcagcagggtgttgacaaagttt |
20961675 |
T |
|
| Q |
303 |
caatattttttcatgttaattgattacataaccaacaaaatggaaaataatttctgggactttgttgaaaaaacatagagaagatgcctactcttaaagt |
402 |
Q |
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|||| |||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20961674 |
caattttttctcatgttaattgattacataactaccaaaatggaaaataatttctgggactttgttgaaaaaacatagagaagatgcctactcttaaagt |
20961575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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