View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9017_low_12 (Length: 313)
Name: NF9017_low_12
Description: NF9017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9017_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 48383587 - 48383868
Alignment:
| Q |
17 |
gagaaggacagagctttggagtttaaggctttggaggtattgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcatgcacatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48383587 |
gagaaggacagagctttggagtttaaggctttggaggtattgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcatgcacatt |
48383686 |
T |
|
| Q |
117 |
cttgttttcttgattgaaatgaactttttgttgaagaaaaaagtactttattttgtccatggattgaagaaatgtgtccaggttttcatttggatcagtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48383687 |
cttgttttcttgattgaaatgaactttttgttgaagaaaaaagtactttattttgttcatggattgaagaaatgtgtccaggttttcatttggatcagtt |
48383786 |
T |
|
| Q |
217 |
tggttctcctcacatgggtgcttttaatcaatcgtggggcccatcgatctaaattggccgcaaagattttgaatgatataac |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48383787 |
tggttctcctcacatgggtgcttttaatcaatcgtggggcccatcgatctaaattggccgcaaagattttgaatgatataac |
48383868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 31 - 298
Target Start/End: Original strand, 48363988 - 48364255
Alignment:
| Q |
31 |
tttggagtttaaggctttggaggtattgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcatgcacattcttgttttcttgat |
130 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48363988 |
tttggagtttagggctttggaggtggtgtatgcttgtgatggtgacattttttggcttgttagttaccaaatggttcatgcacattgttgttttcttgat |
48364087 |
T |
|
| Q |
131 |
tgaaatgaactttttgttgaagaaaaaagtactttattttgtccatggattgaagaaatgtgtccaggttttcatttggatcagtttggttctcctcaca |
230 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48364088 |
tgaaatgaactttttgttgaagaaaaaggtgctttattttgtccatgggttgaagcaatgtgtccaggttttcatttggatcagtttggttctccttaca |
48364187 |
T |
|
| Q |
231 |
tgggtgcttttaatcaatcgtggggcccatcgatctaaattggccgcaaagattttgaatgatataac |
298 |
Q |
| |
|
||||| ||||| ||||||| | || ||| ||||||||||| ||||||| | ||||||||||| |||| |
|
|
| T |
48364188 |
tgggtactttttatcaatcacgaggtccagcgatctaaattagccgcaaggtttttgaatgatgtaac |
48364255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 48398551 - 48398284
Alignment:
| Q |
20 |
aaggacagagctttggagtttaaggctttggaggtattgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcatgcacattctt |
119 |
Q |
| |
|
|||||| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
48398551 |
aaggacggagatttggagtttggggctttggaggtggtgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcacgcacattgtg |
48398452 |
T |
|
| Q |
120 |
gttttcttgattgaaatgaactttttgttgaagaaaaaagtactttattttgtccatggattgaagaaatgtgtccaggttttcatttggatcagtttgg |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
48398451 |
gttttcttgattgaaatgaactttttattgaagaaaaaggtgctttattttgttcatggactgaagaaatgtatccaggttttcacttggattgctttgg |
48398352 |
T |
|
| Q |
220 |
ttctcctcacatgggtgcttttaatcaatcgtggggcccatcgatctaaattggccgcaaagattttg |
287 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||| | ||||||||| |
|
|
| T |
48398351 |
ttctcctcacttgggtgcttttaatcaatcgtggagtccagcgatctaaattggccacgaagattttg |
48398284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University