View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9017_low_19 (Length: 210)
Name: NF9017_low_19
Description: NF9017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9017_low_19 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 27516521 - 27516325
Alignment:
| Q |
16 |
tataaaagtgattagatctgacaatggaggggaatattttaaaaaggatttaatggagttcatgaactctaaaggcattttgcatcaaactacatgtcct |
115 |
Q |
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| T |
27516521 |
tataaaagtgattagatctgacaatggaagggaatattttaaaaaggaattaatggagttcatgaactctaaaggcattttgcatcaaactacatgtcct |
27516422 |
T |
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| Q |
116 |
tactcaccccaacaaaatggagtggctgagaggaaaaatag-cacatattagaagtgacacgatcactcttaatagatggtgatg-tccatctcatt |
210 |
Q |
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| T |
27516421 |
tactcaccccaacaaaatggagtggctgagaggaaaaatagacacatattagaagtgacacgatcactcttaatagatggtaatgttccatctcatt |
27516325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 52684336 - 52684278
Alignment:
| Q |
98 |
catcaaactacatgtccttactcaccccaacaaaatggagtggctgagaggaaaaatag |
156 |
Q |
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| T |
52684336 |
catcaaagtacatgtgttaactcaccccaacaaaatggaatagcggagaggaaaaatag |
52684278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 56392280 - 56392084
Alignment:
| Q |
16 |
tataaaagtgattagatctgacaatggaggggaatattttaaaaaggatttaatggagttcatgaactctaaaggcattttgcatcaaactacatgtcct |
115 |
Q |
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| T |
56392280 |
tataaaagtgattagatctgacaatggaagggaatattttaaaaaggaattaatggagttcatgaactctaaaggcattttgcatcaaactacatgtcct |
56392181 |
T |
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| Q |
116 |
tactcaccccaacaaaatggagtggctgagaggaaaaatag-cacatattagaagtgacacgatcactcttaatagatggtgatg-tccatctcatt |
210 |
Q |
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| T |
56392180 |
tactcaccccaacaaaatggagtggccgagaggaaaaatagacacatattagaagtgacacgatcactcttaatagatggtaatgttccatctcatt |
56392084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 40456259 - 40456080
Alignment:
| Q |
17 |
ataaaagtgattagatctgacaatggaggggaatattttaaaaaggatttaatggagttcatgaactctaaaggcattttgcatcaaactacatgtcctt |
116 |
Q |
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| T |
40456259 |
ataaaggtcattagatcagacaatggaggggaatattttaaaaccgaattaacaaagtttttaaactctaaaggcattttgcatcaaactacatgtccat |
40456160 |
T |
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| Q |
117 |
actcaccccaacaaaatggagtggctgagaggaaaaatag-cacatattagaagtgacacgatcactcttaatagatggt |
195 |
Q |
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| T |
40456159 |
attcacctcaacaaaatggagtggctgagaggaaaaatagacatttattagaggtgacaagatcactcctaatagatggt |
40456080 |
T |
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