View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9017_low_9 (Length: 365)
Name: NF9017_low_9
Description: NF9017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9017_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 25251573 - 25251227
Alignment:
| Q |
1 |
tttataagatttctatattcatttcctatatttcttctcaggggatattgctcggtctatccaataccgctggagtactggctggtgttcttggaacagc |
100 |
Q |
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| T |
25251573 |
tttataagatttctatattcatttgctatatttcttctcaggggatattgctcggtctatccaataccgctggagtactggctggtgttcttggaacagc |
25251474 |
T |
|
| Q |
101 |
agcaacaggttacattctgcaacatggtaagtatttgttcttcatatttattcttactaaatgttaatggtcaattatctcggaaacttaaaatattacg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25251473 |
agcaacaggttacattctgcaacatggtaagtatttgttcttcatatttattcttactaaatgttaatggtcaattatctcagaaacttaaaatattacg |
25251374 |
T |
|
| Q |
201 |
tgaagccgtcaataattttattatatctcttaatggtgaagaatgagtatatatttctactgtcttaaatctgaaaagtatcaatttgatattgatagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25251373 |
tgaagccgtcaataattttattatatctcttaatggtgaagaatgagtatatatttctactgtcttaaatctgaaaagtatcaatttggtattgatagtt |
25251274 |
T |
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| Q |
301 |
tggcaaagaagcattattcgttccacctaatacttcaatgaaatctt |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25251273 |
tggcaaagaagcattattcgttccacctaatacttcaatgaaatctt |
25251227 |
T |
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