View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9018_high_3 (Length: 217)
Name: NF9018_high_3
Description: NF9018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9018_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 19783943 - 19783763
Alignment:
| Q |
23 |
tgatattgaattgatattataaatagatagaagaaatgtatattaattgtaaggtaaaaatgagaatggagtcaatggaatatgtaaatagactgatagt |
122 |
Q |
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| T |
19783943 |
tgatattgaattgatattataaatagatagaagaaatgtatattaattgtaaggtaaagatgagaatggagtcaatggaatatgtaaatagactgatagt |
19783844 |
T |
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| Q |
123 |
taacttagatatatcgtagagttgttggtacataataagttaaagtagatgtcttagtatttaat-ttacaaacacaacac |
202 |
Q |
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| T |
19783843 |
taacttagatatatcataaagttgttggtacataataagttaaagtagatgtcttagtatttaatattacaaacacaacac |
19783763 |
T |
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Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 14571960 - 14571778
Alignment:
| Q |
19 |
atattgatattgaattgatattataaatagatagaagaaatgtatattaattgtaaggtaaaaatgagaatggagtcaatggaatatgtaaatagactga |
118 |
Q |
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| T |
14571960 |
atatcgatattgaattgatattataaatagatagaagaaatgtatattaattgtaaggtaaagatgagaatggagtcaatggaatatgcaaatagactga |
14571861 |
T |
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| Q |
119 |
tagttaacttagatatatcgtagagttgttggtacataataagttaaagtagatgtcttagtatttaat-ttacaaacacaacac |
202 |
Q |
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| T |
14571860 |
tagttaacttagatatatc--agagttgttggtacataataagttaaagtagatgtcttagtatttaatattacaaacacaacac |
14571778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 21651267 - 21651362
Alignment:
| Q |
19 |
atattgatattgaattgatattataaatagatagaagaaatgtatattaattgtaaggtaaaaatgagaatggagtcaatggaatatgtaaataga |
114 |
Q |
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| T |
21651267 |
atattgatattgaattgatattataaatagatagaagaaatgtatattaattgtaaggtaaagatgagaatggagtcaatggaatatgtaaataga |
21651362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 21651359 - 21651417
Alignment:
| Q |
139 |
tagagttgttggtacataataagttaaagtagatgtcttagtatttaatttacaaacac |
197 |
Q |
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| T |
21651359 |
tagagttgttggtacataataagttaaagtagatgtcttagtatttaatttacaaacac |
21651417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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