View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9018_low_1 (Length: 964)
Name: NF9018_low_1
Description: NF9018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9018_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 28 - 407
Target Start/End: Original strand, 11665673 - 11666030
Alignment:
| Q |
28 |
cccgtatcgtttcttgctttatattttgagtagaggtaaagtggcgtaaaattcttgaaggtagaaatttggctaagtctgcttcctatgatttgtgcca |
127 |
Q |
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| T |
11665673 |
cccgtttcgtttcttgctttatattttgagtagaggtaa-gtggcgtaaaatttttgaaggtagaaatttggctaagtctgcttgctatgatttgtgcca |
11665771 |
T |
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| Q |
128 |
tattacgagggtgaagaaaacatgggactttataggtagaaaccaagatatcccctcttatgctagcaaatatccttgggtagcaaatgatgttatgttt |
227 |
Q |
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| T |
11665772 |
tattacgagggtgaagaaaacatggtactttataggtagaaaccaagatatcccctcttatgctagcaaat-----------------gatgttatgttt |
11665854 |
T |
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| Q |
228 |
ctttgatctctatactctaattttgagtgtttaaggaagattttagactatataaaggccagacccctcgatgactgggaggttgcctccttaattaaac |
327 |
Q |
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| T |
11665855 |
ctttgatctctatactctaattttgagtgtttaaggaagattttagactatataaaggccagacccctcgatgactgggagctttcctccttag----ac |
11665950 |
T |
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| Q |
328 |
catgatactcagatttgtgaccgatcctcataagtgtggctcatgatatataaagatatcattaagaatatgggttaggt |
407 |
Q |
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| T |
11665951 |
catgatactcagatttgtgaccgatcctcataagtgtggctcatgatatataaagatatcattaagaatatgggttaggt |
11666030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 409 - 513
Target Start/End: Original strand, 11666074 - 11666178
Alignment:
| Q |
409 |
tttcttaagcctttagaaatccaccctagttcgtgggtggtttattttgggttttcataagttatgttgctttttgagcgtgccgttatttctcctcctt |
508 |
Q |
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| T |
11666074 |
tttcttaagcctttagaaatccaccctagttcgtgggtggtttattttgggttttcataagttatgttgttttttgagcgtgccgctatttctcctcctt |
11666173 |
T |
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| Q |
509 |
ttttg |
513 |
Q |
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| T |
11666174 |
ttttg |
11666178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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