View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9018_low_3 (Length: 836)
Name: NF9018_low_3
Description: NF9018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9018_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 20 - 578
Target Start/End: Original strand, 39444739 - 39445292
Alignment:
| Q |
20 |
agaagattatgaggaaaactagttattaattataaactcgcacaactgttcatgcatcttgaaagtcctcctaccaatagtatattgaattttgtatctt |
119 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39444739 |
agaagattatgaggaaaacgagttatta----taaactcgcacaactgttgatgcatcttgaaagtcctcctaccaatagtatattgaattttgcatctt |
39444834 |
T |
|
| Q |
120 |
gaaacttgctcatatataatcttttgatttgatgcacaattcaggatcggatgttcaggtttttctctctctcattactttagatctggtattcttccta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39444835 |
gaaacttgctcatatataatcttttgatttgatgcacaattcaggatcggatgttcaggttttt-tctctctcattactttagatctggtcttcttccta |
39444933 |
T |
|
| Q |
220 |
aaaggaaaggctctttctatattcatagagattttatcatgaatttccccagggccatgttgaattaacaaaccagggccatctaattcaatgtgtgata |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39444934 |
aaaggaaaggctctttctatattcatagagattttatcatgaatttccccagggccatgttgaattaacaaaccagggccatctaattcaatgtgtgata |
39445033 |
T |
|
| Q |
320 |
gtgaacgggataaacgtaattagaggtgtaagttagggaacagaaaaatcataattgcacatgtatccttttaatcatgttttgaagatgaatagggaaa |
419 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39445034 |
gtgaacgggataaacgtaattggaggtgtaagttagggaacagaaaaatcataattgcacatgtagccttttaatcatgttttgaagatgaatagggaaa |
39445133 |
T |
|
| Q |
420 |
ttgattttggcgtattagggcttcttataacaatacttttttgattttgaagttttgttagctgtggcattacatccattgttgttgccgcaaagagtga |
519 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39445134 |
ttgattttggcggattagggcttcttataacaatactttttttattttgaaattttgttagcagtggcattacatccattgttgttgccgcaaagagtga |
39445233 |
T |
|
| Q |
520 |
tgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacattttt |
578 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39445234 |
tgaaaccaaatacagcacctaaagaaaaatttcaagaaaattatattatcaacattttt |
39445292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 573 - 815
Target Start/End: Original strand, 39446083 - 39446316
Alignment:
| Q |
573 |
atttttctatatactggaggattgaattaaattaaatagaacttgacattggaaataaatctaacaaacatttgctaaggagagattttttattattann |
672 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || | |
|
|
| T |
39446083 |
atttttctatatattggaggattgaattaaattaaatagaacttgacattggaaataaatctaacaaacatttgttaaggagagattttttttttct--- |
39446179 |
T |
|
| Q |
673 |
nnnnnnnnnngtatttaccctctagtttcaacgagaagggctctcgtaatcctgaattcggttgggagataagtaaaatttgaccaaaaaatatttcact |
772 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||| |||| ||||||| |
|
|
| T |
39446180 |
------ttttgtatttaccctctggtttcaacgagaagggctctcgtaatcctgaattcggttgggagagaaataaaatttggccaacaaatgtttcact |
39446273 |
T |
|
| Q |
773 |
taagaattgaacccaagttctcctaaaaaattcgttattggtg |
815 |
Q |
| |
|
| ||||| ||| |||| ||||||||||||||| ||||| |||| |
|
|
| T |
39446274 |
ttagaatcgaatccaaattctcctaaaaaatttgttatcggtg |
39446316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 39467292 - 39467362
Alignment:
| Q |
20 |
agaagattatgaggaaaactagttattaattataaactcgcacaactgttcatgcatcttgaaagtcctcctacc |
94 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39467292 |
agaagattatgaggaaaacaagttatta----taaactcgcacaactgttcatgaatcttgaaagtcctcctacc |
39467362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 496 - 655
Target Start/End: Original strand, 35314772 - 35314931
Alignment:
| Q |
496 |
cattgttgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacatttttctatatactggaggatt |
595 |
Q |
| |
|
|||| |||||||| || ||||||||||||| ||||||| |||||||||||||||| ||||||||||||| |||||||||||| || ||| | ||| ||| |
|
|
| T |
35314772 |
cattattgttgccacatagagtgatgaaactaaatacagctgctaaagaaaaattcaaagaaaattatattatcaacattttt-taaatattagagaatt |
35314870 |
T |
|
| Q |
596 |
ga-attaaattaaatagaacttgacattggaaataaatctaacaaacatttgctaaggaga |
655 |
Q |
| |
|
|| |||||||||||||||| || ||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
35314871 |
gatattaaattaaatagaattttacattggcgataaatctaacaaacatttattaaggaga |
35314931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 398 - 646
Target Start/End: Original strand, 35315621 - 35315858
Alignment:
| Q |
398 |
gttttgaagatgaatagggaaattgattttggcgtattagggcttcttataacaatacttttttgattttgaagttttgttagctgtggcattacatcca |
497 |
Q |
| |
|
||||| ||||| |||||||| ||| ||||||| | |||||| ||||||||||||| ||| || || |||||| |||||||||| | ||| ||| || |
|
|
| T |
35315621 |
gtttttaagataaatagggagattcattttggagggttagggtttcttataacaatgcttgttcgactttgaaattttgttagcaccgatattgcatgca |
35315720 |
T |
|
| Q |
498 |
ttgttgttgccgcaaagagtgatgaaaccaaatacatctgctaaagaaaaatttcaagaaaattatatcatcaacatttttctatatactggaggattga |
597 |
Q |
| |
|
|||||||||| | ||||| | |||||||||||| | ||||||||||||| ||||| |||||||||||| || ||| ||||||||||| |
|
|
| T |
35315721 |
ttgttgttgctactaagagcggtgaaaccaaatatagttgctaaagaaaaa------------tatattatcaacatttttttaaatattggaggattga |
35315808 |
T |
|
| Q |
598 |
-attaaattaaatagaacttgacattggaaataaatctaacaaacatttg |
646 |
Q |
| |
|
|||||||||||||||| |||||| | ||||| ||| ||||||||||| |
|
|
| T |
35315809 |
tattaaattaaatagaatttgacactaacaataactcttacaaacatttg |
35315858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University