View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9018_low_6 (Length: 405)
Name: NF9018_low_6
Description: NF9018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9018_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 23831023 - 23830641
Alignment:
| Q |
18 |
gttaaaagagttgagcaacttgactataagtttggatgtattagtaaagacgcgtatgaaaggtaaaggggacgaaggaaggtgagtatggtgattcatg |
117 |
Q |
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| T |
23831023 |
gttaaaagagttgagcaacttgactataagtttggatgtattagtaaagacgtgtatgaaaggtaaaggggacgaaggaaggtgagtatggtgattcatg |
23830924 |
T |
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| Q |
118 |
catgacattcattgtatgacatgttgtgggaactggtttaactgtaatggacccccttttgttttgttttgattggacaaaatccttaatannnnnnnng |
217 |
Q |
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| T |
23830923 |
catgacattcattgtatgacatgttgtgggaactggtttaactgtaatggacccccttttgttttgttttgattggacaaaatccttaata-tttttttg |
23830825 |
T |
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| Q |
218 |
caaagttttctagtccattagattttactgttaacatccctacatttggtttcagatagcttctcgtactataagttggctctagcaagtggtaagcttc |
317 |
Q |
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| T |
23830824 |
caaagttttctagtccattagattttactgttaacatcccgacatttggtttcagatagcttctcgtactataagttggctctagcaagtggtaagcttc |
23830725 |
T |
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| Q |
318 |
catgacttgtaagcaagtggagcataattgaaccttttttggcctttaacatgatgacttatgcaagcgatgggtgaacaccgg |
401 |
Q |
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| T |
23830724 |
catgacttgtaagcaagtggagcataattgaaccttttttggcctttaacatgatgacttatgcaagtgatgggtgaacaccgg |
23830641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 23817416 - 23817378
Alignment:
| Q |
75 |
gaaaggtaaaggggacgaaggaaggtgagtatggtgatt |
113 |
Q |
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| T |
23817416 |
gaaaggtgaatgggacgaaggaaggtgagtatggtgatt |
23817378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 23826874 - 23826842
Alignment:
| Q |
89 |
acgaaggaaggtgagtatggtgattcatgcatg |
121 |
Q |
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| T |
23826874 |
acgaaggaaagtgagtatggtgattcatgcatg |
23826842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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