View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9018_low_7 (Length: 303)
Name: NF9018_low_7
Description: NF9018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9018_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 26796627 - 26796337
Alignment:
| Q |
1 |
atcaacattgggataaaccgtgactgagaaatggtctttatccattaaaatactcgtaacagtgtgctttttgtgcatctgaataacaacaatgccatga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26796627 |
atcaacattgggataaaccgtgactgagaaatggtctttatccattaaaatactcgtaacagtgtgctttttgtgcatctgcataacaacaatgccatga |
26796528 |
T |
|
| Q |
101 |
aaattgatttgtgcttagtatatacttataatccaatcaaaataattaattaaaactgaatatactcttggttagtatatacaagaggatttttaattac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26796527 |
aaattgatttgtgcttagtatatacttataatccaatcaaaataattaattaaaactgaatatactcttgattagtatatacaagaggatttttaattac |
26796428 |
T |
|
| Q |
201 |
ctgtgcaacaatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttct |
291 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26796427 |
ctgtgcaacaatgttgttagattcaccagcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttct |
26796337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 26582974 - 26583089
Alignment:
| Q |
176 |
tatatacaagaggatttttaattacctgtgcaacaatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaa |
275 |
Q |
| |
|
||||||| ||| | ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| | |||||||| |
|
|
| T |
26582974 |
tatatactagatgctttttaattacctgtgcaacaatgttgttagtatcaccagcataaacaatacaagatcgttccaaccaactacctttgactttaaa |
26583073 |
T |
|
| Q |
276 |
atcacaaacatcttct |
291 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26583074 |
atcacaaacatcttct |
26583089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 26801359 - 26801259
Alignment:
| Q |
191 |
ttttaattacctgtgcaacaatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttc |
290 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||| |||||||||| ||| |
|
|
| T |
26801359 |
ttttaattacctgagcaacaatgttgttagattcaccagcataaacaatgcaagatcgatcaaaccaactacctttaactttaaagtcacaaacattttc |
26801260 |
T |
|
| Q |
291 |
t |
291 |
Q |
| |
|
| |
|
|
| T |
26801259 |
t |
26801259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 26831099 - 26831006
Alignment:
| Q |
198 |
tacctgtgcaacaatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttct |
291 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
26831099 |
tacctgtgcaacaatgttattagattcaccagcataaacaatgcaagatcgttcagaccaactacctttgactttaaagtcacaaacatcttct |
26831006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 26807269 - 26807176
Alignment:
| Q |
198 |
tacctgtgcaacaatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttct |
291 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||| || || |||||||||||| |
|
|
| T |
26807269 |
tacctgtgcgacaatgttgttagattcaccggcataaacaatacaagatcgttcgaaccaactacctttgactttgaagtcgcaaacatcttct |
26807176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 26837559 - 26837466
Alignment:
| Q |
198 |
tacctgtgcaacaatgttgttagattcaccggcataaacaatgcaagatcgttccaaccaactacctctaactttaaaatcacaaacatcttct |
291 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| |||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
26837559 |
tacctgtgcaacaatgttattagattcaccagcataaacactacaagatcgttcgaaccaactccctttaactttaaagtcacaaacatcttct |
26837466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 26582804 - 26582884
Alignment:
| Q |
1 |
atcaacattgggataaaccgtgactgagaaatggtctttatccattaaaatactcgtaacagtgtgctttttgtgcatctg |
81 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||||||| |
|
|
| T |
26582804 |
atcaacactgggataaacagtgactgcgaaatggtctttatcaattaaaatactctgaatagtgtgctttttgtgcatctg |
26582884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 26807601 - 26807494
Alignment:
| Q |
1 |
atcaacattgggataaaccgtgactgagaaatggtctttatccattaaaatactcgtaacagtgtgctttttgtgcatctg-aataacaacaatgccatg |
99 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| | ||||||| |||| |||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
26807601 |
atcaacattgggataaatcgtgaccatgaaatggtctttgccaattaaaagactctgaacagtgtgctttttgtgcatctgcgataacaacaatgtcatg |
26807502 |
T |
|
| Q |
100 |
aaaattga |
107 |
Q |
| |
|
||| |||| |
|
|
| T |
26807501 |
aaagttga |
26807494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 26837730 - 26837677
Alignment:
| Q |
28 |
gaaatggtctttatccattaaaatactcgtaacagtgtgctttttgtgcatctg |
81 |
Q |
| |
|
||||||||||||| | |||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
26837730 |
gaaatggtctttaccaattaaaatgctcgtcaccgtgtgctttttgtgcatctg |
26837677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 26801550 - 26801431
Alignment:
| Q |
1 |
atcaacattgggataaaccgtgactgagaaatggtctttatccattaaaatactcgtaacagtgtgctttttgtgcatctg-aataacaacaatgccatg |
99 |
Q |
| |
|
||||||||||||||| | ||||| ||||| |||||| | ||||||||||| ||| |||| ||||||||||||||| |||||||| ||| ||| |
|
|
| T |
26801550 |
atcaacattgggatagattgtgaccatgaaattatctttaccaattaaaatactttgaaccgtgtactttttgtgcatctgcaataacaataatacca-- |
26801453 |
T |
|
| Q |
100 |
aaaattgatttgtgcttagtat |
121 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
26801452 |
aaaattgatttgtgattagtat |
26801431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 26831266 - 26831213
Alignment:
| Q |
28 |
gaaatggtctttatccattaaaatactcgtaacagtgtgctttttgtgcatctg |
81 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
26831266 |
gaaatggtctttatcaattaaaatgttcgtaaccgtgttttttttgtgcatctg |
26831213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University