View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9018_low_9 (Length: 299)

Name: NF9018_low_9
Description: NF9018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9018_low_9
NF9018_low_9
[»] chr4 (6 HSPs)
chr4 (5-285)||(28787960-28788236)
chr4 (5-103)||(24856237-24856335)
chr4 (8-103)||(24853349-24853444)
chr4 (5-139)||(51246622-51246749)
chr4 (15-103)||(28787018-28787106)
chr4 (5-139)||(17525460-17525589)
[»] scaffold0406 (1 HSPs)
scaffold0406 (5-103)||(6280-6378)
[»] chr7 (1 HSPs)
chr7 (5-103)||(22622375-22622473)
[»] chr5 (5 HSPs)
chr5 (5-84)||(5046448-5046527)
chr5 (5-84)||(5047219-5047298)
chr5 (5-84)||(5047990-5048069)
chr5 (46-103)||(5664821-5664877)
chr5 (12-72)||(5663780-5663840)
[»] chr8 (1 HSPs)
chr8 (13-103)||(1275201-1275291)
[»] chr2 (2 HSPs)
chr2 (5-139)||(20978804-20978940)
chr2 (11-99)||(33798848-33798936)
[»] chr3 (3 HSPs)
chr3 (5-84)||(12738191-12738270)
chr3 (5-84)||(12739342-12739421)
chr3 (5-49)||(15023059-15023103)
[»] chr1 (4 HSPs)
chr1 (5-103)||(22055466-22055563)
chr1 (5-105)||(29371903-29372004)
chr1 (5-77)||(22056567-22056638)
chr1 (107-139)||(22056518-22056550)
[»] scaffold0272 (1 HSPs)
scaffold0272 (64-103)||(3559-3598)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 5 - 285
Target Start/End: Original strand, 28787960 - 28788236
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatattt 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28787960 tagattattctagttctagaaacatcttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatattt 28788059  T
Q  105 aatattgaaggcttcaccatatgatattctctcctaatttctaatgtgtgtactcttatccttactactattctctccaccactacagctccctaagcta 204  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28788060 aatattgaaggcttcaccacatgatattctctcctaatttctaatgtgtgtcctcttatccttactactattctctccaccactacagctccctaagcta 28788159  T
Q  205 tcctctccaccactacagctccctaggctatatatattttannnnnnnnccaacagaagtctactatgcagcttgttttct 285  Q
    ||||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||||||||||||||    
T  28788160 tcctctccaccactacagctccctaggctatatatatatt----tttttccaacagaagtctactatgcagcttgttttct 28788236  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 24856237 - 24856335
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 103  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||  || ||||||||||||| |||||||||||||||||||||||||||||    
T  24856237 tagattattctagttctagaaacattttctaacacctataaatagacttattaggatgcaattgtattccagcctttaagatgcaatgtcaataatatt 24856335  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 24853349 - 24853444
Alignment:
Q  8 attattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 103  Q
    ||||||||||||||| |||||| ||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  24853349 attattctagttctaaaaacatcttctaacacctataaatagacttatttggatgcaattgtattcaagcctttaagatgcaatgtcaataatatt 24853444  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 51246622 - 51246749
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatattt 104  Q
    ||||||||||||||||||||||||| | ||| ||||||||| ||||| |||||||||||||||||||||||||||||  |||| ||||||||       |    
T  51246622 tagattattctagttctagaaacatctacaagcacctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtcaa-------t 51246714  T
Q  105 aatattgaaggcttcaccatatgatattctctcct 139  Q
    ||||||||||||||||||| || ||||||||||||    
T  51246715 aatattgaaggcttcaccaaatcatattctctcct 51246749  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 28787018 - 28787106
Alignment:
Q  15 tagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 103  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||  ||||||||    
T  28787018 tagttctagaaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttttagatgcaatgtatataatatt 28787106  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 17525589 - 17525460
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaa--tgtcaataatat 102  Q
    ||||||||||||||||||||||||| | ||| | | ||||||||||| |||||| ||| |||||||||||||||||| ||||||||  ||||||          
T  17525589 tagattattctagttctagaaacatctacaagcgcttataaatagacttatatgtgtgaaattgtattcaagcctttgagatgcaatgtgtcaa------ 17525496  T
Q  103 ttaatattgaaggcttcaccatatgatattctctcct 139  Q
     ||||||||||||||||||||||| ||||||||||||    
T  17525495 -taatattgaaggcttcaccatatcatattctctcct 17525460  T

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Target: scaffold0406 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 6280 - 6378
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 103  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  6280 tagattattctagttctagaaacagcttcaagcacctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtcaataatatt 6378  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 22622473 - 22622375
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 103  Q
    |||||||||||| |||||||||||| ||||  ||| ||||||||| | ||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  22622473 tagattattctaattctagaaacatcttcaggcacttataaataggcttatatgggtgcaattgtattcaagcctttgagatgccatgtcaataatatt 22622375  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 5046448 - 5046527
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaag 84  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  5046448 tagattattctagttttagaaacatctacaagcacctataaatagacttatatgagtgcaattgtattcaagcctttaag 5046527  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 5047219 - 5047298
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaag 84  Q
    ||||||||||||||| ||||||||| | ||| |||||||||||| || |||||| |||||||||||||||||||||||||    
T  5047219 tagattattctagttttagaaacatctacaagcacctataaatatacttatatgagtgcaattgtattcaagcctttaag 5047298  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 5047990 - 5048069
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaag 84  Q
    ||||||||||||||| || |||||| | ||| |||||||||||| || |||||| |||||||||||||||||||||||||    
T  5047990 tagattattctagttttaaaaacatctacaagcacctataaatatacttatatgagtgcaattgtattcaagcctttaag 5048069  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 5664877 - 5664821
Alignment:
Q  46 atagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 103  Q
    |||||| ||||||||||||||||||||||||| ||||| || ||||| ||||||||||    
T  5664877 atagacttatatgggtgcaattgtattcaagcttttaa-atacaatgacaataatatt 5664821  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 5663840 - 5663780
Alignment:
Q  12 ttctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtatt 72  Q
    |||||||| ||||||||| ||||| ||| ||||||||||  ||||||||||| ||||||||    
T  5663840 ttctagttttagaaacatcttcaatcacttataaatagaattatatgggtgcgattgtatt 5663780  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 1275291 - 1275201
Alignment:
Q  13 tctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 103  Q
    ||||||||||||||||  ||||| ||||||||| || |  ||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  1275291 tctagttctagaaacaccttcaagcacctataagtataggtatatgggtgcaattgtattcaaacgtttaagatgcaatgtcaataatatt 1275201  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 20978940 - 20978804
Alignment:
Q  5 tagattattctagttctagaaacattttcaaac-acctataaatagacatatatgggtgcaattgtattcaagccttta--------agatgcaatgtca 95  Q
    ||||||||||||||||||||||||| | ||||  ||||||||||| || ||||||||||| ||| ||||||||||||||        |||||||||||||    
T  20978940 tagattattctagttctagaaacatctacaaagtacctataaataaacttatatgggtgccattatattcaagcctttaaacctttgagatgcaatgtca 20978841  T
Q  96 ataatatttaatattgaaggcttcaccatatgatattctctcct 139  Q
    |       ||||||||||||||||||||||| ||||||||||||    
T  20978840 a-------taatattgaaggcttcaccatatcatattctctcct 20978804  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 33798936 - 33798848
Alignment:
Q  11 attctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataa 99  Q
    |||||| |||||||||||| |||||  | ||||||||||| |   ||  |||||||||||||||||||||| ||||| || ||||||||    
T  33798936 attctacttctagaaacatcttcaaggatctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaacgtcaataa 33798848  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 12738191 - 12738270
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaag 84  Q
    ||||| ||| ||||||||||||||| | ||| |||||||||||| || ||| ||||||||||||||||||||||||||||    
T  12738191 tagataattttagttctagaaacatctacaagcacctataaataaacttatttgggtgcaattgtattcaagcctttaag 12738270  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 12739342 - 12739421
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaag 84  Q
    ||||||||| ||||||||||||||| | ||| || |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  12739342 tagattattttagttctagaaacatctacaagcatctataaatagaattatttggatgcaattgtattcaagcctttaag 12739421  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 15023059 - 15023103
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatag 49  Q
    ||||||||| ||||||||||||||| | ||| |||||||||||||    
T  15023059 tagattattttagttctagaaacatctacaagcacctataaatag 15023103  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 22055563 - 22055466
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 103  Q
    ||||||||| ||||||||||| ||| ||||| ||| ||||||||||| |  |  |||||||||||| |||||||||| |||||||||||| ||||||||    
T  22055563 tagattattttagttctagaatcatcttcaagcacttataaatagac-tggaatggtgcaattgtagtcaagcctttcagatgcaatgtcgataatatt 22055466  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 29371903 - 29372004
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgc-aattgtattcaagcctttaagatgcaatgtcaataatatt 103  Q
    |||||||||| |||  || |||||| ||||| ||| ||||||||||  ||||||||||| ||||||||  ||||||||||||| |||| |||| || |||    
T  29371903 tagattattcaagtattataaacatcttcaagcacttataaatagatttatatgggtgcaaattgtatgtaagcctttaagatacaatatcaagaacatt 29372002  T
Q  104 ta 105  Q
    ||    
T  29372003 ta 29372004  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 22056638 - 22056567
Alignment:
Q  5 tagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagc 77  Q
    |||||||||||||||||||||| || ||||| |||||||||| |||| || |  |||||||||| ||||||||    
T  22056638 tagattattctagttctagaaatatcttcaagcacctataaagagactta-aaaggtgcaattgcattcaagc 22056567  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 22056550 - 22056518
Alignment:
Q  107 tattgaaggcttcaccatatgatattctctcct 139  Q
    |||||||||||||||||||| ||||||||||||    
T  22056550 tattgaaggcttcaccatattatattctctcct 22056518  T

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Target: scaffold0272 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 3598 - 3559
Alignment:
Q  64 aattgtattcaagcctttaagatgcaatgtcaataatatt 103  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  3598 aattgtattcaaacctttgagatgcaatgtcaataatatt 3559  T

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