View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9019_high_4 (Length: 332)
Name: NF9019_high_4
Description: NF9019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9019_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 32243606 - 32243915
Alignment:
| Q |
1 |
tacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtgcatgacacattggaaattatggcatctggagaagttttcaatggtaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32243606 |
tacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtgcatgacacattggaaattatggcatctggagaagttttcaatggtaat |
32243705 |
T |
|
| Q |
101 |
attaatgtcgatattggtagtgataaacctaaaggtttgattgaagaagctacattatctcggtatgtccaaggaggaagtgtactggtgcttggggcct |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32243706 |
attaatgtcgatattggtagtgctaaacctaaaggtttgattgaagaagctacattatcccggtatgtccaaggaggaagtgtactggtgcttggggcct |
32243805 |
T |
|
| Q |
201 |
ttatgggttacattctctgttgggttatacatgcaaggaagaagcctgagtccaagagtggttgtaccatcgcgaagactgagaaacatgattagttact |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32243806 |
ttatgggttacattctctgttgggttatacatgcaaggaagaagcctgagtccaagagtggttgtactatcgcgaagactgagaaacatgattagttact |
32243905 |
T |
|
| Q |
301 |
actctttact |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
32243906 |
actctttact |
32243915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 32248687 - 32249003
Alignment:
| Q |
1 |
tacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtgcatgacacattggaaattatggcatctggagaagttttcaatgg---- |
96 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| | | ||| |
|
|
| T |
32248687 |
tacaaagcagaatctcgtgatttcttatgttggtaatcatgatggcgaggtgcatgacacattggagattctggaatctggagaagttgttagtggtggt |
32248786 |
T |
|
| Q |
97 |
-----------taatattaatgtcgatattggtagtgataaacctaaaggtttgattgaagaagctacattatctcggtatgtccaaggaggaagtgtac |
185 |
Q |
| |
|
|||| |||||| || ||||||||||| ||||||| ||||| |||| ||||| | || || || |||||||||| ||||||||||||| |
|
|
| T |
32248787 |
ggtggtaacgataatgttaatggcggtattggtagtgctaaacctgaaggtcagattaaagaatccacgttgtcgtggtatgtccagggaggaagtgtac |
32248886 |
T |
|
| Q |
186 |
tggtgcttggggcctttatgggttacattctctgttgggttatacatgcaaggaaga---agcctgagtccaagagtggttgtaccatcgcgaagactga |
282 |
Q |
| |
|
| |||||||||||||||||||| |||||||| ||| ||| |||||| ||||||| |||| ||||||| |||||||| || | || ||||||||| |
|
|
| T |
32248887 |
tagtgcttggggcctttatgggctacattcttggtttcgtttcacatgctaggaagaagcagcccgagtccaggagtggttttagccccgtgaagactga |
32248986 |
T |
|
| Q |
283 |
-gaaacatgattagtta |
298 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32248987 |
ggaaacatgattagtta |
32249003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University