View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9019_low_1 (Length: 1009)
Name: NF9019_low_1
Description: NF9019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9019_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 896; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 896; E-Value: 0
Query Start/End: Original strand, 20 - 992
Target Start/End: Complemental strand, 31629864 - 31628900
Alignment:
| Q |
20 |
agatgttcacattccttctttgtctgcttagatcaatcagataaagccttaggcatttgggaaatggaagcattgtaacattaatagtatatattaggga |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629864 |
agatgttcacattccttctttgtctgcttagatcaatcagataaagccttaggcatttgggaaatggaagcattgtaacattaatagtatatattaggga |
31629765 |
T |
|
| Q |
120 |
attaaccttgaactttaattaaacaaagacatcaatgatcaatccatcttagcatgtgtttannnnnnnnatttgtttccctcattgataatatattgaa |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31629764 |
attaaccttgaactttaattaaacaaagacatcaatgatcaatccatcttagcatgtgtttattttttttatttgtttccctcattgataatatattgaa |
31629665 |
T |
|
| Q |
220 |
acatttcttaaaccacaaatagctagtttggtttgattaggtgtgtttgggtaaatattttgtgatttggaacataattcatttggttataatcgatttt |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31629664 |
acatttcttaaaccacaaatagctagtttggtttgattaggtgtgtttgggtaaatattttgtgatttgggacataattcatttggttataatcgatttt |
31629565 |
T |
|
| Q |
320 |
gaaataagtgatttatatttagacaatctcattctcaagggaagtttgaagtaaagtcggtgtaaaattgtcaatccaatatagaagttactttggatga |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629564 |
gaaataagtgatttatatttagacaatctcattctcaagggaagtttgaagtaaagtcggtgtaaaattgtcaatccaatatagaagttactttggatg- |
31629466 |
T |
|
| Q |
420 |
ctcctagtcaaagtgaggcttgaaagcaaagacagaaatcaaacatatgtaatttcactaaagtaacttcaatttgtaatatcttgaaatgatacaattt |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629465 |
-------tcaaagtgaggcttgaaagcaaagacagaaatcaaacatatgtaatttcactaaagtaacttcaatttgtaatatcttgaaatgatacaattt |
31629373 |
T |
|
| Q |
520 |
ttattgaagaatattagtagtgatgatgtggtgtctattttggactcttgacacatgcaggacaccggacactctttcaacaagaaatgtccgtaacaca |
619 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629372 |
ttattgaagaaaattagtagtgatgatgtggtgtctattttggactcttgacacatgaaggacaccggacactctttcaacaagaaatgtccgtaacaca |
31629273 |
T |
|
| Q |
620 |
tgtcattttgattccaattacgtgatttgataattagatcattaacaaataattcttatcataaaaagtaagaaaggaagcaaaactgaccagaaaatta |
719 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31629272 |
tgtcattttgattccaattacgtaatttgataattagatcattaacaaataattcttatcataaaaagtaagaaaggaaacaaaactgaccagaaaatta |
31629173 |
T |
|
| Q |
720 |
tgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcatagaatatagatgagaaagagatgca |
819 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629172 |
tgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcatagaatatagatgagaaagagatgca |
31629073 |
T |
|
| Q |
820 |
atcaatcataaagagagaatagaataacacaaagaaagttgagttgaactgaaatcaaacctgagagcattatgagaaatggagttgatatggttgattt |
919 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31629072 |
atcaatcataaagagagaatagaataacacaaagaaagttgagttgaactgaaatcaaacctgagagcattatgagaaatggagttgatatggttgagtt |
31628973 |
T |
|
| Q |
920 |
tcgggatacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaagatcaatgtctg |
992 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31628972 |
tcgggatacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaagatcaatgtctg |
31628900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 703 - 800
Target Start/End: Complemental strand, 31643658 - 31643561
Alignment:
| Q |
703 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcatagaata |
800 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31643658 |
aactaaccagaaaattatgatataaaaacgctctaggctcccacgatacgatttcaacccaacgcttattgtcatcgtcttcacttctgcatagaata |
31643561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 706 - 794
Target Start/End: Complemental strand, 31650828 - 31650740
Alignment:
| Q |
706 |
tgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcat |
794 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
31650828 |
tgaccagaaaattatgatataaaaatgctctaggctcccacgatatgatttgaacccaacgcttattgtcatcgtcttcatttctgcat |
31650740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 650 - 777
Target Start/End: Complemental strand, 31654359 - 31654226
Alignment:
| Q |
650 |
taattagatcattaacaaataattcttatca-taaaa---agtaagaaaggaagcaa--aactgaccagaaaattatgatataaaaatgctctaggctcc |
743 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||| || ||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
31654359 |
taattagatcattaacaaataatccttatcaataaaagcaagcaagaagggaaacaagaaactgacaagaaaattatgatataaaaatgctctaggctcc |
31654260 |
T |
|
| Q |
744 |
cacgatacgatttgaacccaacgcttattgtcat |
777 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |
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| T |
31654259 |
cacgatatgatttgaacccaacgcttattgtcat |
31654226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 703 - 794
Target Start/End: Complemental strand, 31635684 - 31635593
Alignment:
| Q |
703 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcat |
794 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| || | ||||||| |
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| T |
31635684 |
aactgaccaaaaaattatgatataaaaatactctaggctcccacgatacgatttcaacccaacgcttattgtcatcgtcatcgcgtctgcat |
31635593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 31651462 - 31651342
Alignment:
| Q |
20 |
agatgttcacattccttctttgtctgcttagatcaatcagataaagccttaggcatttgggaaatggaagcattgtaacattaatagtatatattaggga |
119 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||| | ||||||| |||||| |||||||||| |||||||||||| | ||||| |||||| |
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|
| T |
31651462 |
agatgttcacattcctcttttgtctgctcagatcaatcagct-tagcctta-gcatttaggaaatggaa-atttgtaacattaaaactatat-ttagggg |
31651367 |
T |
|
| Q |
120 |
attaaccttgaactttaattaaaca |
144 |
Q |
| |
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||||||| |||||| |||||||||| |
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| T |
31651366 |
attaaccctgaactataattaaaca |
31651342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 922 - 990
Target Start/End: Complemental strand, 31654086 - 31654018
Alignment:
| Q |
922 |
gggatacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaagatcaatgtc |
990 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||| |||||||| |||||||||||||||| || ||||||| |
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|
| T |
31654086 |
gggatacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtc |
31654018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 925 - 990
Target Start/End: Complemental strand, 31650600 - 31650535
Alignment:
| Q |
925 |
atacggagagttaagagaatgagaatgagcaatgtgaaggtcacaaacaatgtgaagatcaatgtc |
990 |
Q |
| |
|
||||| |||||||||| ||| |||||||| |||||||| |||||||||||||||| || ||||||| |
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|
| T |
31650600 |
atacgaagagttaagataataagaatgaggaatgtgaaagtcacaaacaatgtgaggaacaatgtc |
31650535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 31646047 - 31646008
Alignment:
| Q |
20 |
agatgttcacattccttctttgtctgcttagatcaatcag |
59 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| |
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|
| T |
31646047 |
agatgttcacattcctcttttgtctgcttagatcaatcag |
31646008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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