View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9019_low_12 (Length: 296)
Name: NF9019_low_12
Description: NF9019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9019_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 3730089 - 3730353
Alignment:
| Q |
19 |
tcattgggctcaccatcttggtgtcttgaagtgcatcttctaatgtctttattttctgctacaagtattatataaatcatcaaattaccctaagcatatt |
118 |
Q |
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| T |
3730089 |
tcattgggctcaccatcttggtgtcttgaagtgcatcttctaatgtctttattttctgctacaagtattatataaatcatcaaattaccctaagcatatt |
3730188 |
T |
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| Q |
119 |
ggattgcctaggtttaatagagaaattattgcataaaaactcacattcttgatatctccaagactatcttcaagccaatcaattttttgtaatgctaacc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3730189 |
ggattgcctaggtttaatagagaaattattgcataaaaactcacattcttgatatctccaagactagcttcaagccaatcaattttttgtaatgctaacc |
3730288 |
T |
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| Q |
219 |
tacatgacaagcttgttctagcccttgttgtttcctcaagtgccaaactcatacttagatcatct |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3730289 |
tacatgacaagcttgttctagcccttgttgtttcctcaagtgccaaactcatacttagatcatct |
3730353 |
T |
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