View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9019_low_14 (Length: 292)
Name: NF9019_low_14
Description: NF9019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9019_low_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 32243168 - 32243459
Alignment:
| Q |
1 |
tcttcttgggagcaaccaatataacttcttgaagcatgatctggaatcagttgataggaacaagactccttttgtagttgtccaagggcaccgacctatg |
100 |
Q |
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| T |
32243168 |
tcttcttgggagcaaccagtataacttcttgaagcatgatttggaatcagttgacaggaacaagactccttttgtagtagtccaagggcaccgacctatg |
32243267 |
T |
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| Q |
101 |
tacacaacaattaatggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctgttggtgaataacaatgtgtcccttgcccttt |
200 |
Q |
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| T |
32243268 |
tacaccacaatcaacggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctattggtgaataacaatgtgtcccttgcccttt |
32243367 |
T |
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| Q |
201 |
ggggccatgttcacagatacgagagattttgtccactgaataactacacttgtggaaatggtgtgggccagagagcaggagacagaggatat |
292 |
Q |
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| T |
32243368 |
ggggccatgttcatagatacgagagattttgtccactgaataactacacttgtggaaatggtgtgggccagagagcaagagacaaaggatat |
32243459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 279
Target Start/End: Original strand, 32248250 - 32248527
Alignment:
| Q |
2 |
cttcttgggagcaaccaatataacttcttgaagcatgatctggaatcagttgataggaacaagactccttttgtagttgtccaagggcaccgacctatgt |
101 |
Q |
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|||| ||||||||| || ||||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
32248250 |
cttcctgggagcaatcagtataacttcttaaagcgtgatttggaatcagttgacaggaacaagactccttttgtagtagtccaagggcaccgacccatgt |
32248349 |
T |
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| Q |
102 |
acacaacaattaatggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctgttggtgaataacaatgtgtcccttgccctttg |
201 |
Q |
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||||||||| |||| | | ||||| | |||||||| | ||||| | |||||| |||||||||| |||||||||||| |||| ||||||||||||| |
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| T |
32248350 |
acacaacaagcaatgaatttagggatgctgcgttaagaggaaagatggttgagcacctggaacctctattggtgaataaccatgtaacccttgccctttg |
32248449 |
T |
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| Q |
202 |
gggccatgttcacagatacgagagattttgtccactgaataactacacttgtggaaatggtgtgggccagagagcagg |
279 |
Q |
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||| |||||||| || |||||||||||||||||||| || |||| |||||||||||||||||||| | ||||||||| |
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| T |
32248450 |
gggtcatgttcataggtacgagagattttgtccactaaacaactttacttgtggaaatggtgtgggtcggagagcagg |
32248527 |
T |
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