View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9019_low_2 (Length: 552)
Name: NF9019_low_2
Description: NF9019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9019_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 20 - 543
Target Start/End: Original strand, 38582227 - 38582750
Alignment:
| Q |
20 |
aaagtagcttgtttaagctaaaccatgaagggacacaaactcaagaaaaaacacaaacacaagnnnnnnntgatgacttgttggatacaatggattacac |
119 |
Q |
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| T |
38582227 |
aaagtagcttgtttaagctaaaccatgaagggacacaaactcaagaaaaaacacaaacacaagaaaaaaatgatgacttgttggatacaatggattacac |
38582326 |
T |
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| Q |
120 |
acctgcctcaaagaatccaccaatccataattaaagtctcctagttttannnnnnnnnnctttccttagaggacaatttttggtaggnnnnnnnngcacc |
219 |
Q |
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| T |
38582327 |
acctgcctcaaagaatccaccaatccataattaaagtctcctagttttatttattttttctttccttagaggacaatttttggtaggaaacaaaagcacc |
38582426 |
T |
|
| Q |
220 |
aatccacagtgcttaattaccctgcaattctatctatgagcttcaatgtaaagatatattttgaactttgaagtagggaaatccacacttaaatcacaga |
319 |
Q |
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| T |
38582427 |
aatccagagtgcttaattaccctgcaattctatctatgagcttcaatgtaaagatatattttgaactttgaagtagggaaatccacacttaaatcacaga |
38582526 |
T |
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| Q |
320 |
tttttgtggaggaaaaagcaccagtcttgttgatgcttaatcatatatttagaactatcacttgtaaatatatagttttggaagttatgagagtgtgagg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582527 |
tttttgtggaggaaaaagcaccagtcttgttgatgcttaatcatatatttagaactatcacttgtaaatatatagttttggaagttatgagagtgtgagg |
38582626 |
T |
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| Q |
420 |
ggagcatatataaacataggatttgtcaaagttttattaatatattgctcaatcaccaaaaacagatgcttagtatatttaccttaccttatgcagacat |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582627 |
ggagcatatataaacataggatttgtcaaagttttattaatatattgctcaatcaccaaaaacagatgcttagtatatttaccttaccttatgcagacat |
38582726 |
T |
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| Q |
520 |
aagtttttgatatctctgcttctc |
543 |
Q |
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| T |
38582727 |
aagtttttgatatctctgattctc |
38582750 |
T |
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