View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9019_low_4 (Length: 530)

Name: NF9019_low_4
Description: NF9019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9019_low_4
NF9019_low_4
[»] chr2 (13 HSPs)
chr2 (20-273)||(38823386-38823658)
chr2 (364-512)||(42148680-42148828)
chr2 (364-443)||(39062889-39062968)
chr2 (364-421)||(35029873-35029930)
chr2 (364-412)||(34228147-34228195)
chr2 (364-464)||(34229043-34229143)
chr2 (364-411)||(4855361-4855408)
chr2 (364-413)||(6205443-6205492)
chr2 (363-400)||(39063804-39063841)
chr2 (371-410)||(39064611-39064650)
chr2 (370-443)||(39062225-39062298)
chr2 (363-464)||(40320240-40320341)
chr2 (364-444)||(4854473-4854553)
[»] chr7 (6 HSPs)
chr7 (21-273)||(26582242-26582513)
chr7 (159-249)||(44390497-44390586)
chr7 (364-443)||(35753054-35753137)
chr7 (364-411)||(25674893-25674940)
chr7 (363-411)||(25675768-25675816)
chr7 (360-400)||(48204143-48204183)
[»] chr3 (6 HSPs)
chr3 (364-496)||(44312305-44312437)
chr3 (363-488)||(44311392-44311516)
chr3 (365-449)||(52102552-52102636)
chr3 (364-408)||(34329152-34329196)
chr3 (369-443)||(40810275-40810349)
chr3 (363-400)||(23513687-23513724)
[»] chr8 (13 HSPs)
chr8 (159-249)||(20168788-20168877)
chr8 (361-443)||(6462605-6462687)
chr8 (363-443)||(42578708-42578788)
chr8 (149-207)||(28583927-28583985)
chr8 (362-412)||(38443693-38443743)
chr8 (367-410)||(42503029-42503072)
chr8 (364-404)||(34587361-34587401)
chr8 (364-443)||(6461880-6461959)
chr8 (364-407)||(42503947-42503990)
chr8 (364-421)||(12203354-12203411)
chr8 (364-421)||(12447782-12447839)
chr8 (363-408)||(38443623-38443668)
chr8 (363-411)||(11519349-11519397)
[»] chr1 (8 HSPs)
chr1 (363-450)||(10469605-10469692)
chr1 (363-421)||(7338810-7338868)
chr1 (369-411)||(49618303-49618345)
chr1 (364-401)||(1764516-1764553)
chr1 (367-412)||(7338012-7338057)
chr1 (363-464)||(30430393-30430494)
chr1 (364-421)||(41459450-41459507)
chr1 (364-400)||(27891319-27891355)
[»] chr5 (4 HSPs)
chr5 (84-207)||(2397952-2398086)
chr5 (364-443)||(120073-120152)
chr5 (368-474)||(126217-126322)
chr5 (369-412)||(2639717-2639760)
[»] chr6 (2 HSPs)
chr6 (364-482)||(18066239-18066356)
chr6 (363-412)||(34260115-34260164)
[»] chr4 (7 HSPs)
chr4 (358-464)||(39310390-39310496)
chr4 (364-410)||(31414870-31414916)
chr4 (364-410)||(32159544-32159590)
chr4 (364-443)||(39311361-39311440)
chr4 (169-273)||(44095781-44095887)
chr4 (369-410)||(32158804-32158845)
chr4 (364-400)||(5469996-5470032)
[»] scaffold0098 (1 HSPs)
scaffold0098 (364-411)||(52264-52311)
[»] scaffold0330 (1 HSPs)
scaffold0330 (368-410)||(13264-13306)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 38823658 - 38823386
Alignment:
Q  20 caatttatgatttttgtgtttgtctcttaaatcaatcaaaaagtaacaaacatggaaa----------aacactggtgttgtttttcatcccttaagaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||          ||||||||||||||||||||||||||||||||    
T  38823658 caatttatgatttttgtgtttgtctcttaaatcaatcaaaaagtaaaaaacatagaaagaattttcgaaacactggtgttgtttttcatcccttaagaat 38823559  T
Q  110 cgttttttaatctaaggattaaaaggattgttaatttaaaatccatttc---------ttgtgattctaattttatctaattaatttgttcttcaatttt 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  38823558 cattttttaatctaaggattaaaaggattgttaatttaaaatccatttaatccacttgttgtgattctaattttatctaattaatttgttcttcaatttt 38823459  T
Q  201 agaaagactctcagttttaattaattaatctcatcaaaattgttcatgtggttatggatttgcaatgaaattg 273  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38823458 agaaagactctcagtgttaattaattaatctcatcaaaattgttcatgtggttatggatttgcaatgaaattg 38823386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 364 - 512
Target Start/End: Original strand, 42148680 - 42148828
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaatctaacggctaacattaaaa 463  Q
    ||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||| |||||||||||||| | |||||||||||| || ||||||||    
T  42148680 gagtccatctttgctccatttatgttttctcaatttatcccatttcaagacttagatgaatgacatatggcaaaattaaatctaacggttatcattaaaa 42148779  T
Q  464 gatgaagaataaaaaggatccaggtaataaaaatatagaaatcaatcac 512  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  42148780 gatgaagaacaaaaaggatccaggtaataaaaaaatagaaagcaatcac 42148828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 39062968 - 39062889
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaa 443  Q
    ||||||||||||| |||||||||||||  ||||||||| | |||||||| | |||||| ||||||| |||||| ||||||    
T  39062968 gagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtggcaacaataaa 39062889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 35029930 - 35029873
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatg 421  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||||||| | ||||||    
T  35029930 gagtctatctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatg 35029873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 34228147 - 34228195
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaag 412  Q
    |||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  34228147 gagtccatctttgctccatttaagattcctcaatttaccccatttcaag 34228195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 464
Target Start/End: Complemental strand, 34229143 - 34229043
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaatctaacggctaacattaaaa 463  Q
    |||||||||||||||||||||| | ||||||||||||| |||||| ||| | ||||||  |||||| ||| || |||||| | || |||| | |||||||    
T  34229143 gagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaa 34229044  T
Q  464 g 464  Q
    |    
T  34229043 g 34229043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 4855408 - 4855361
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaa 411  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  4855408 gagttcatctttgctccatttatgtttgctcaatttactccttttcaa 4855361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 6205492 - 6205443
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaaga 413  Q
    |||||||||||||||||||||| | ||||||||||||| |||||| ||||    
T  6205492 gagtccatctttgctccatttaggcttcctcaatttaccccattttaaga 6205443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 39063804 - 39063841
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaattta 400  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  39063804 tgagtccatctttgctccatttaggtttcctcaattta 39063841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 410
Target Start/End: Complemental strand, 39064650 - 39064611
Alignment:
Q  371 tctttgctccatttatgtttcctcaatttactccatttca 410  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  39064650 tctttgctccatttatgtttcctcaatttattccttttca 39064611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 39062225 - 39062298
Alignment:
Q  370 atctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaa 443  Q
    |||||||||||||||  ||||  ||||||||  |||||||||| | |||||| ||||||| |||||| ||||||    
T  39062225 atctttgctccattttggtttgttcaatttatcccatttcaagtcatagatgtatgacatgtggcaaaaataaa 39062298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 464
Target Start/End: Original strand, 40320240 - 40320341
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaatctaacggctaacattaaa 462  Q
    ||||| |||||||||||||||||   || ||| ||||| ||| ||||||  | |||||| |||||| |||| || ||||||||||| |||| | ||||||    
T  40320240 tgagttcatctttgctccatttagccttgctccatttaatccttttcaatgcatagatgcatgacacatggtaaaaataaatctaagggctgaaattaaa 40320339  T
Q  463 ag 464  Q
    ||    
T  40320340 ag 40320341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 444
Target Start/End: Original strand, 4854473 - 4854553
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaat 444  Q
    |||| |||||||||||||||||||||  ||| ||||||||| ||||||    ||||||  |||||||||| || |||||||    
T  4854473 gagttcatctttgctccatttatgttgactccatttactccttttcaatgtatagatgtgtgacatatggtaaaaataaat 4854553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 26582242 - 26582513
Alignment:
Q  21 aatttatgatttttgtgtttgtctcttaaatcaatcaaaaagtaacaaacatggaaa----------aacactggtgttgtttttcatcccttaagaatc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||          |||||||||||||||||||||||||||||||||    
T  26582242 aatttatgatttttgtgtttgtctcttaaatcaatcaaaaagtaacaaacatagaaagaattttcgaaacactggtgttgtttttcatcccttaagaatc 26582341  T
Q  111 gttttttaatctaaggattaaaaggattgttaatttaaaatccatttc---------ttgtgattctaattttatctaattaatttgttcttcaatttta 201  Q
     ||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||| ||||||||||||||    
T  26582342 attttttaatctaaggattaaaaggattgttaatttaaaatccatttaatccatttgttgtgattctaattttatctaattaattcgttcttcaatttta 26582441  T
Q  202 gaaagactctcagttttaattaattaatctcatcaaaattgttcatgtggttatggatttgcaatgaaattg 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  26582442 gaaagactctcagttttaattaattaatctcatcaaaattgttcaagttgttatggatttgcaatgaaattg 26582513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 44390497 - 44390586
Alignment:
Q  159 ttgtgattctaattttatctaattaatttgttcttcaattttagaaagactctcagttttaattaattaatctcatcaaaattgttcatgt 249  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||    
T  44390497 ttgtgattctaattttaattaattaatttgttcttcaattttagaaagactcactgtttcaattaattaatctcatcaaaa-tgttcatgt 44390586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 35753137 - 35753054
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctca----atttactccatttcaagacttagatggatgacatatggcaataataaa 443  Q
    ||||||||||||||||||||||||||| ||||    |||||| |||||||| | | |||||| ||||||| |||||| ||||||    
T  35753137 gagtccatctttgctccatttatgtttactcaatttatttaccccatttcacgtcatagatgtatgacatgtggcaaaaataaa 35753054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 25674893 - 25674940
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaa 411  Q
    |||| |||||||||||||||| ||||| ||||||||||||| ||||||    
T  25674893 gagttcatctttgctccatttgtgtttgctcaatttactccttttcaa 25674940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 25675816 - 25675768
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaatttactccatttcaa 411  Q
    ||||| |||||||||||||||||||||  ||| ||||||||| ||||||    
T  25675816 tgagttcatctttgctccatttatgttggctccatttactccttttcaa 25675768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 400
Target Start/End: Original strand, 48204143 - 48204183
Alignment:
Q  360 ctctgagtccatctttgctccatttatgtttcctcaattta 400  Q
    |||||||||||||||||||||||||| |||| ||| |||||    
T  48204143 ctctgagtccatctttgctccatttaagtttgctccattta 48204183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 364 - 496
Target Start/End: Complemental strand, 44312437 - 44312305
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaatctaacggctaacattaaaa 463  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| | ||||| |||||| |   |||||||    
T  44312437 gagtccatctttgctccatttatgtttcctcaatttaccccattttaagacttagattgatgacatatggcaaaattaaatataacggttgtgattaaaa 44312338  T
Q  464 gatgaagaataaaaaggatccaggtaataaaaa 496  Q
    |||||||||||||||||||| ||||||||||||    
T  44312337 gatgaagaataaaaaggatctaggtaataaaaa 44312305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 363 - 488
Target Start/End: Original strand, 44311392 - 44311516
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatat-ggcaataataaatctaacggctaacattaa 461  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||||| |||||| |   |||||    
T  44311392 tgagtctatctttgctctatttatgtttcctcaatttattccatttcaagacttagatggatgacatatgggcaat--taaatttaacggttgtgattaa 44311489  T
Q  462 aagatgaagaataaaaaggatccaggt 488  Q
    |||||||||||||||||||||| ||||    
T  44311490 aagatgaagaataaaaaggatctaggt 44311516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 365 - 449
Target Start/End: Original strand, 52102552 - 52102636
Alignment:
Q  365 agtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaatctaac 449  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||||||    
T  52102552 agtccatctttgctcaatttatgtttcctcaatttactccattttaagacttagatgaatgacatatggcaaaattaaatctaac 52102636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 34329196 - 34329152
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccattt 408  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||    
T  34329196 gagtccatctttgcttcatttatttttgctcaatttactccattt 34329152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 443
Target Start/End: Complemental strand, 40810349 - 40810275
Alignment:
Q  369 catctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaa 443  Q
    ||||||||||||||||| ||||||||||||||  |||||| ||| | | ||||  ||||| ||||||| ||||||    
T  40810349 catctttgctccatttaagtttcctcaatttatcccattttaagtcatggatgtgtgacacatggcaaaaataaa 40810275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 400
Target Start/End: Original strand, 23513687 - 23513724
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaattta 400  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  23513687 tgagtccatctttgctccatttatctttgctcaattta 23513724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 20168788 - 20168877
Alignment:
Q  159 ttgtgattctaattttatctaattaatttgttcttcaattttagaaagactctcagttttaattaattaatctcatcaaaattgttcatgt 249  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||||||    
T  20168788 ttgtgattctaattttaattaattaatttgttcttcaattttagaaagactcactgtttcaattaattaatctcatcaaaa-tgttcatgt 20168877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 6462687 - 6462605
Alignment:
Q  361 tctgagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaa 443  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| ||||||| |||||| ||||||    
T  6462687 tctgagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcctagatgtatgacatgtggcaaaaataaa 6462605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 363 - 443
Target Start/End: Original strand, 42578708 - 42578788
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaa 443  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||| | |||||| ||||||| |||||| ||||||    
T  42578708 tgagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaa 42578788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 28583985 - 28583927
Alignment:
Q  149 aatccatttcttgtgattctaattttatctaattaatttgttcttcaattttagaaaga 207  Q
    ||||| ||| |||||||||||||||||  |||||||||| |||||||||||||||||||    
T  28583985 aatccctttgttgtgattctaattttaattaattaattttttcttcaattttagaaaga 28583927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 412
Target Start/End: Original strand, 38443693 - 38443743
Alignment:
Q  362 ctgagtccatctttgctccatttatgtttcctcaatttactccatttcaag 412  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  38443693 ctgagtccatctttgctccatttaagtttccacaatttaccccatttcaag 38443743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 410
Target Start/End: Original strand, 42503029 - 42503072
Alignment:
Q  367 tccatctttgctccatttatgtttcctcaatttactccatttca 410  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  42503029 tccatctttgctccatttaagtttcctcaatttaccccatttca 42503072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 34587401 - 34587361
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactcc 404  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  34587401 gagttcatctttgctccatttaagtttcctcaatttactcc 34587361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 443
Target Start/End: Original strand, 6461880 - 6461959
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaa 443  Q
    |||| ||||||||||||||||  |||| ||||||||| | |||||||||   |||||| ||||||| |||||| ||||||    
T  6461880 gagttcatctttgctccatttcggtttgctcaatttatttcatttcaagttatagatgtatgacatgtggcaaaaataaa 6461959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 42503990 - 42503947
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatt 407  Q
    |||||||||||||||||||||| | ||||||||||||| |||||    
T  42503990 gagtccatctttgctccatttaggcttcctcaatttaccccatt 42503947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 12203411 - 12203354
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatg 421  Q
    |||||||||||||||||||||   |||||||||||||  |||||||||| | ||||||    
T  12203411 gagtccatctttgctccatttcattttcctcaatttataccatttcaagtcatagatg 12203354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 12447839 - 12447782
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatg 421  Q
    |||||||||||||||||||||   |||||||||||||  |||||||||| | ||||||    
T  12447839 gagtccatctttgctccatttcattttcctcaatttataccatttcaagtcatagatg 12447782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 38443668 - 38443623
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaatttactccattt 408  Q
    ||||||||||||||||||||||| |||| ||| |||||| ||||||    
T  38443668 tgagtccatctttgctccatttaagtttgctccatttaccccattt 38443623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 411
Target Start/End: Original strand, 11519349 - 11519397
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaatttactccatttcaa 411  Q
    ||||| ||||||||||| ||||| ||||| ||||||||| |||||||||    
T  11519349 tgagttcatctttgctcaatttaggtttcttcaatttaccccatttcaa 11519397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 363 - 450
Target Start/End: Complemental strand, 10469692 - 10469605
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaatctaacg 450  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||| | |||||||||||    
T  10469692 tgagtccatctttgctcaatttatgtttcctcaatttactccattttaagacttagatgaatgacacatgacaaaattaaatctaacg 10469605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 7338868 - 7338810
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatg 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  7338868 tgagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatg 7338810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 49618303 - 49618345
Alignment:
Q  369 catctttgctccatttatgtttcctcaatttactccatttcaa 411  Q
    ||||||||||||||||| | ||||||||||||| |||||||||    
T  49618303 catctttgctccatttaggcttcctcaatttaccccatttcaa 49618345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 1764516 - 1764553
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttac 401  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  1764516 gagtccatctttgctccatttaagtttgctcaatttac 1764553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 412
Target Start/End: Original strand, 7338012 - 7338057
Alignment:
Q  367 tccatctttgctccatttatgtttcctcaatttactccatttcaag 412  Q
    |||||||||||||||||||| ||| |||||||||  ||||||||||    
T  7338012 tccatctttgctccatttatattttctcaatttatcccatttcaag 7338057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 464
Target Start/End: Complemental strand, 30430494 - 30430393
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaatctaacggctaacattaaa 462  Q
    ||||| |||||||||||||||||   |||||| ||||||||| || |||  | |||||  ||||||| |||||| |||||||| || || ||| ||||||    
T  30430494 tgagttcatctttgctccatttagtattcctccatttactcctttccaatgcatagataaatgacatgtggcaaaaataaatcaaagggttaagattaaa 30430395  T
Q  463 ag 464  Q
    ||    
T  30430394 ag 30430393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 41459507 - 41459450
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatg 421  Q
    |||| ||||||||||||||||||||||  |||||||||||  |||||| || ||||||    
T  41459507 gagttcatctttgctccatttatgtttgttcaatttactcattttcaatacatagatg 41459450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 27891355 - 27891319
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaattta 400  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  27891355 gagtccatctttgctccatttatctttactcaattta 27891319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 2397952 - 2398086
Alignment:
Q  84 ggtgttgtttttcatcccttaagaatcgtttttt-aatctaa-ggattaaaaggattgttaatttaaaatccatt---------tcttgtgattctaatt 172  Q
    |||||||||||||||||||||||| ||||||||| || |||| ||||||| |||||||| |||||||||| ||||         | ||||||||||||||    
T  2397952 ggtgttgtttttcatcccttaagactcgtttttttaacctaaaggattaagaggattgtcaatttaaaattcattcaatccctttgttgtgattctaatt 2398051  T
Q  173 ttatctaattaatttgttcttcaattttagaaaga 207  Q
    |||  ||||||||||||||||||||||||||||||    
T  2398052 ttaattaattaatttgttcttcaattttagaaaga 2398086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 443
Target Start/End: Original strand, 120073 - 120152
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaa 443  Q
    |||| |||||||||||||||||  |||||||||||||| ||||||||||   ||||||  |||||||||| || ||||||    
T  120073 gagttcatctttgctccatttagctttcctcaatttaccccatttcaagttatagatgcgtgacatatggaaaaaataaa 120152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 474
Target Start/End: Complemental strand, 126322 - 126217
Alignment:
Q  368 ccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaatctaacggctaacattaaaagatg 467  Q
    |||| ||||||||||||| |||| |||||||||| |||||| |||   ||||||  ||| ||||||||| | |||||||||||| ||  ||||||||||     
T  126322 ccatttttgctccatttaggttttctcaatttac-ccattttaagttatagatgtgtgatatatggcaaaactaaatctaacggttatgattaaaagatc 126224  T
Q  468 aagaata 474  Q
    |||||||    
T  126223 aagaata 126217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 412
Target Start/End: Original strand, 2639717 - 2639760
Alignment:
Q  369 catctttgctccatttatgtttcctcaatttactccatttcaag 412  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||    
T  2639717 catctttgctccatttatttttgctcaatttaccccatttcaag 2639760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 482
Target Start/End: Complemental strand, 18066356 - 18066239
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaatctaacggctaacattaaaa 463  Q
    |||| ||||||||||||||||   |||||||||||||| |||||| ||| | ||||||  |||||| |||||| ||||| ||||||||||   |||||||    
T  18066356 gagttcatctttgctccattttgctttcctcaatttac-ccattttaagtcatagatgtctgacatttggcaaaaataagtctaacggctgtgattaaaa 18066258  T
Q  464 gatgaagaataaaaaggat 482  Q
    ||| |||||||| ||||||    
T  18066257 gatcaagaataataaggat 18066239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 412
Target Start/End: Original strand, 34260115 - 34260164
Alignment:
Q  363 tgagtccatctttgctccatttatgtttcctcaatttactccatttcaag 412  Q
    ||||||||||||||||||||||   |||||||||||||| ||||||||||    
T  34260115 tgagtccatctttgctccattttcctttcctcaatttaccccatttcaag 34260164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 358 - 464
Target Start/End: Original strand, 39310390 - 39310496
Alignment:
Q  358 atctctgagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaatctaacggctaaca 457  Q
    ||||| |||||||||||||||||||||| | ||||||||||||  ||||||||||   |||||| ||||||| ||| || |||||| | || |||| | |    
T  39310390 atctccgagtccatctttgctccatttaagattcctcaatttatcccatttcaagttatagatgtatgacatgtggaaaaaataaaaccaatggctgaga 39310489  T
Q  458 ttaaaag 464  Q
    |||||||    
T  39310490 ttaaaag 39310496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 31414916 - 31414870
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttca 410  Q
    |||||||||||||||||||||| |||||||||||||| ||| |||||    
T  31414916 gagtccatctttgctccatttaagtttcctcaatttattccttttca 31414870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 32159590 - 32159544
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttca 410  Q
    |||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  32159590 gagtgcatctttgctccatttaggtttcctcaatttaccccatttca 32159544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 39311440 - 39311361
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagacttagatggatgacatatggcaataataaa 443  Q
    |||||||||||||||||||||| | || |||||||||| |||||| ||| | ||||||  |||||| ||| || ||||||    
T  39311440 gagtccatctttgctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaa 39311361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 44095781 - 44095887
Alignment:
Q  169 aattttatctaattaatttgttcttcaattttagaaagactctca-gttttaattaattaatctcatcaaaat-tgttcatgtggttatgga-tttgcaa 265  Q
    |||||||  |||||||||| ||||||| ||||||||||| | ||| |||| |||||| |||||||||||||||   || |||||||||| || |||||||    
T  44095781 aattttaattaattaatttcttcttcagttttagaaaga-tttcatgtttcaattaagtaatctcatcaaaatcattttatgtggttatagattttgcaa 44095879  T
Q  266 tgaaattg 273  Q
    ||||||||    
T  44095880 tgaaattg 44095887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 32158804 - 32158845
Alignment:
Q  369 catctttgctccatttatgtttcctcaatttactccatttca 410  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||    
T  32158804 catctctgctccatttaggtttcctcaatttaccccatttca 32158845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 5470032 - 5469996
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaattta 400  Q
    |||||||||||||||||||||| |||| |||||||||    
T  5470032 gagtccatctttgctccatttaagtttgctcaattta 5469996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 52264 - 52311
Alignment:
Q  364 gagtccatctttgctccatttatgtttcctcaatttactccatttcaa 411  Q
    |||| |||||||||||||||| ||||||||| ||||||||| ||||||    
T  52264 gagttcatctttgctccatttttgtttcctccatttactccttttcaa 52311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 410
Target Start/End: Complemental strand, 13306 - 13264
Alignment:
Q  368 ccatctttgctccatttatgtttcctcaatttactccatttca 410  Q
    |||||||||||||||||| |||||||||||||| ||| |||||    
T  13306 ccatctttgctccatttaggtttcctcaatttattccttttca 13264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University